Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03579 ATGTCTTCTGATCTCTATTCTTTTGGTACAACTTTCCACACACATTCAACCTCAGAACATGATGGAACTCAAGATCTTCCATTTCTCTCTGATTCCTTCCCTTTCTTCAACAACACTTCTTCAAACTCATTTCATCACCCTCTTCTTCCTTCTTCTCTAGACCCTTTCTCACCTTCTTTCTTCTCTTTCTCTCCTTCCACTCATCAAAACCTCACAACCTATCATCAAACTAATGAAACTTTCTCAGATTTTGATCTCTCCCAAGTTAAAAACGAGGATTCATCATCACAAATAAGTGCTCATTATTACAACAATAATCAGTTTCTTCCTCATCGTTACACTGGTGCTGAAAATGCATCAAAATACATGCAAAGAAGCTTCAGTAGTAACTCTTTCGAAAAGAAGCCCAGTTTTCAATTTCAAACTCACCATGATAATCTTATGGATTCATCCAAATTTCAACTGCATGATTTAAGCTCAACTGATAATAGTTTGAGAAGGGTTTGTAGCACAGGTGATTTGCAGAACATGAAAGAAAATAACATGTCTCCAACGGAGGGAAATTTGCAAGAGGAATCAAATTTCAAAGTAGGGCGTTACAGTGCTGAAGAAAGAAAGGAAAAAATTTCGAAATACAGAGCTAAGAGAACACAAAGGAACTTTAATAAGACTATTAAGTATGCATGTCGAAAGACACTAGCAGACAATCGACCGCGTGTACGTGGCAGGTTCGCGCGTAATGATGAGCCTAACGAGATTCCTAAGGTTCCGTGTAGAGACGAAGACGAAGTCGATTTTTGGATGGAAGAATTGAGGTTATATGAAGATGATGTAACAGTGGGAGCAGCAGAGCAATATCTGAAGAGTAATAGTTATGGAGTTAGTCAATTTCAATACTTTGGATTATGA 909 0.3773 MSSDLYSFGTTFHTHSTSEHDGTQDLPFLSDSFPFFNNTSSNSFHHPLLPSSLDPFSPSFFSFSPSTHQNLTTYHQTNETFSDFDLSQVKNEDSSSQISAHYYNNNQFLPHRYTGAENASKYMQRSFSSNSFEKKPSFQFQTHHDNLMDSSKFQLHDLSSTDNSLRRVCSTGDLQNMKENNMSPTEGNLQEESNFKVGRYSAEERKEKISKYRAKRTQRNFNKTIKYACRKTLADNRPRVRGRFARNDEPNEIPKVPCRDEDEVDFWMEELRLYEDDVTVGAAEQYLKSNSYGVSQFQYFGL 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03579 302 ProSiteProfiles CCT domain profile. 205 247 IPR010402 GO:0005515
Vifa6g03579 302 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 52 267 IPR045281 GO:0009909
Vifa6g03579 302 Pfam CCT motif 205 247 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03579 Vifa-Chr6 1173319531 1173320894 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03579 201 252 C2C2-CO-like Transcription Factor Family AT5G24930 48.077 1.91e-10 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa6g03579 CCT 3.8e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03579 - - psat:127101452 500.745