Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03570 ATGGGCGGTTGTTGCTGTTGTGCTTCTAAGGAGACTGTGTTGAGTGCTCCACCTGCTTACTATTATCAGTATCCAAGAGCATCAGATGAGCATGTTCCACTATCTTCTCATCAAGTCGGTGCCACTCAGACTGCACCTGTGGCTCAAGAAATTTGCTGTGACAAGAACAACACAAATTCTAACTCAGTTCAAGAACCATCTGGAGACAATAACGCAACCCCACCTAAGTCAGAAGAACTGAAGGAATCAGAATGCAAAGGTCAGACTGATTTAGAACTAGACTCGGCAAAGGATTCTGAAATTGAACTTTCAAAGTTGGGCGAACCTATAAATTTAGTAGAAGAAGAGGATGGATGCCCGATATGTTTAGAAGAATATGACGATGAGAATCCAAAACTCACCACAAAATGTGATCATCATTATCACCTTGCTTGCATTCTGGAATGGATGGAAAGAAGTGACACTTGCCCTGTCTGTGCTCAGGCCTTGGTTTTCAGCCCTCCCATTGAGTAG 513 0.4327 MGGCCCCASKETVLSAPPAYYYQYPRASDEHVPLSSHQVGATQTAPVAQEICCDKNNTNSNSVQEPSGDNNATPPKSEELKESECKGQTDLELDSAKDSEIELSKLGEPINLVEEEDGCPICLEEYDDENPKLTTKCDHHYHLACILEWMERSDTCPVCAQALVFSPPIE 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03570 170 MobiDBLite consensus disorder prediction 56 74 - -
Vifa6g03570 170 Pfam Ring finger domain 119 159 IPR001841 -
Vifa6g03570 170 FunFam Putative E3 ubiquitin-protein ligase RHB1A 96 164 - -
Vifa6g03570 170 SUPERFAMILY RING/U-box 113 166 - -
Vifa6g03570 170 SMART ring_2 119 159 IPR001841 -
Vifa6g03570 170 ProSiteProfiles Zinc finger RING-type profile. 119 159 IPR001841 -
Vifa6g03570 170 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 51 166 - -
Vifa6g03570 170 MobiDBLite consensus disorder prediction 56 102 - -
Vifa6g03570 170 MobiDBLite consensus disorder prediction 75 102 - -
Vifa6g03570 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 164 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03570 Vifa-Chr6 1171043171 1171045355 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03570 1 165 C3H Transcription Factor Family AT5G41350 40.758 1.19e-40 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03570 - - gmx:100816369 250.366