Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03569 ATGGGCGGTTGTTGCTGTTGTGCTTCTAAGGAGACTGTGTTGAGTGCTCCACCTGCTTACTATTATTATCCAAGAGCATCAGATGAGCATGTTCCACTATCTTCTCATCAAGTCGGTGCCACTCAGACTGCACCTGTGGCTCAAGAAATTTGCTGTGACAAGAACAACACAAATTCTAACTCAGTTCAAGAACCATCTGGAGACAATAACGCAACCCCACCTAAGTCAGAAGAACTGAAGGAATCAGAATGCAAAGGTCAGACTGATTTAGAACTAGACTCGGCAAAGGATTCTGAAATTGAACTTTCAAAGTTGGGCGAACCTATAAATTTAGTAGAAGAAGAGGATGGATGCCCGATATGTTTAGAAGAATATGACGATGAGAATCCAAAACTCACCACAAAATGTGATCATCATTATCACCTTGCTTGCATTCTGGAATGGATGGAAAGAAGTGACACTTGCCCTGTCTGTGCTCAGGCCTTGGTTTTCAGCCCTCCCATTGAGTAG 510 0.4314 MGGCCCCASKETVLSAPPAYYYYPRASDEHVPLSSHQVGATQTAPVAQEICCDKNNTNSNSVQEPSGDNNATPPKSEELKESECKGQTDLELDSAKDSEIELSKLGEPINLVEEEDGCPICLEEYDDENPKLTTKCDHHYHLACILEWMERSDTCPVCAQALVFSPPIE 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03569 169 MobiDBLite consensus disorder prediction 57 99 - -
Vifa6g03569 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 163 IPR013083 -
Vifa6g03569 169 ProSiteProfiles Zinc finger RING-type profile. 118 158 IPR001841 -
Vifa6g03569 169 MobiDBLite consensus disorder prediction 57 73 - -
Vifa6g03569 169 Pfam Ring finger domain 118 158 IPR001841 -
Vifa6g03569 169 SMART ring_2 118 158 IPR001841 -
Vifa6g03569 169 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 50 165 - -
Vifa6g03569 169 MobiDBLite consensus disorder prediction 74 99 - -
Vifa6g03569 169 SUPERFAMILY RING/U-box 112 165 - -
Vifa6g03569 169 FunFam Putative E3 ubiquitin-protein ligase RHB1A 95 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03569 Vifa-Chr6 1171043171 1171045355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03569 1 164 C3H Transcription Factor Family AT5G41350 40.191 1.92e-42 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03569 - - gmx:100816369 253.062