Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03567 ATGGACCTGCTGTTGGAATTGATCTTGGCACAACCTATTCCTGTGTTGCTTGATCAAAGGTTGATTGGTGAAGCTGCCAAAAATCAGGCTGCTACAAACCCTACCAACACTGTCTTTGGTGTAAAGAGGTTGATTGGAAGGAAATATATTGTTGCTGGCAAAGATGACAAACCTGAGATACTTGTTGAATATAAGGGTGAAGAAAAACGGCTTTGTGCTGAAGAAATATCGTCTATGATTCTCATGAAGATGCGTGAGATTGCAGAATTTTTTTTGGAGTCACCTGTTAAGAATGCAGTTGTTACTGTGCCGACTTATTTTAATGATTCTCAGCGAAAGGCTACAAAAGATGCTTGCGTTATTGCTGGCCTCAACGTGTTGCGGATAATCAATGAACCAACAGCGGCTGCCCTAGCATATGGCCTTCAAAAGAGAGCTAATAATGTTGGTAAACGAAATGTTTTTGTCTTTGATCTCAGCGGTGGCACTTTTGATGTGTCTCTCCTCACACTAAAAGATAATGGATTTGATGTGAAAGCCACAGCCGGAGATACTCTCCTTGGAGGAGAGGACTTTGATAACAGAATGGTGAAGTATTTAGTGGAGGAGTTTAAGCGGAAGAATAAAGTTGACATTCATGGGAACCAGAGGGCCCTAAGGAGGTTGAGAACCGCTTGTGAAAAGGCTAAGAGAACATTGTCATTTGATACCGAGACTATGATTGAAATCGATGCTTTATACGATGGAATCGACTTCAATTTTTTAGTCACTAGGGCTAAGTTTGAACAACTCAACATGGATCAGTTTGAAAAGTGTTTGGAAGTTGTCAAGAACTGCCTTGTTGATGCTAAGATGGCTATCAGTAAAGTGGACGATGTTGTTCTTGTTGGCGGCAGTTCTAGGATTCCCAGATCATGCACCAAGGTTGCACTTGATTTTGTCTCACCTGAAAATGTTGGTGAGTGCTTCCGTTTGACAGAAGAATTCCACAAACTTCCGGAATACCACGGGTCAAAAGAGGACAAATTGCAGGTGAAGAAAATGGTTATACATGATGTGGATGATGCAGTCAAAAGGTTTAAAAACTCTACATCTGCTACAGTTAGCCACATAAGGGCGAATGGAGTTGTGCAGGAAAACATGGGAAGTTCATCCTTTGACTGTGAACATGACATTCGTCTCGACGAAGAGATTGGTATATATTGCAGGTGGTGTGGATGGGTTGTCATTGAGATCAAATACGTCTCACCACTGTGGTAA 1260 0.4167 MDLLLELILAQPIPVLLDQRLIGEAAKNQAATNPTNTVFGVKRLIGRKYIVAGKDDKPEILVEYKGEEKRLCAEEISSMILMKMREIAEFFLESPVKNAVVTVPTYFNDSQRKATKDACVIAGLNVLRIINEPTAAALAYGLQKRANNVGKRNVFVFDLSGGTFDVSLLTLKDNGFDVKATAGDTLLGGEDFDNRMVKYLVEEFKRKNKVDIHGNQRALRRLRTACEKAKRTLSFDTETMIEIDALYDGIDFNFLVTRAKFEQLNMDQFEKCLEVVKNCLVDAKMAISKVDDVVLVGGSSRIPRSCTKVALDFVSPENVGECFRLTEEFHKLPEYHGSKEDKLQVKKMVIHDVDDAVKRFKNSTSATVSHIRANGVVQENMGSSSFDCEHDIRLDEEIGIYCRWCGWVVIEIKYVSPLW 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03567 419 SUPERFAMILY Actin-like ATPase domain 18 144 IPR043129 -
Vifa6g03567 419 SUPERFAMILY Actin-like ATPase domain 151 304 IPR043129 -
Vifa6g03567 419 Gene3D - 39 79 - -
Vifa6g03567 419 Gene3D - 145 304 - -
Vifa6g03567 419 PRINTS 70kDa heat shock protein signature 99 119 - -
Vifa6g03567 419 PRINTS 70kDa heat shock protein signature 162 172 - -
Vifa6g03567 419 PRINTS 70kDa heat shock protein signature 290 306 - -
Vifa6g03567 419 PRINTS 70kDa heat shock protein signature 26 34 - -
Vifa6g03567 419 PANTHER HEAT SHOCK PROTEIN 70KDA 19 304 IPR013126 GO:0005524|GO:0140662
Vifa6g03567 419 Gene3D Actin; Chain A, domain 4 188 271 - -
Vifa6g03567 419 Gene3D - 18 144 - -
Vifa6g03567 419 FunFam Heat shock 70 kDa 188 271 - -
Vifa6g03567 419 Pfam Hsp70 protein 19 308 IPR013126 GO:0005524|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03567 Vifa-Chr6 1170621181 1170630877 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03567 19 304 Calmodulin-binding Proteins AT3G12580 68.439 2.17e-141 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03567 K03283 - gmx:100804476 409.453