Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03560 ATGGCAAACGAATCTTCCGTTGATCGCGTTGAAGCTGAAACGTTTGCTGAATATCGTGGTAACGGTGGTTGTGTGGTGGAGGAACATGCTGATAGCGGTGATTATGACAAAGCGAAACAGAAATCTTTGTTTTGTCAAATTTTTTCGGTTTACCTTAAGGAGGATTGTGGTAAAGGTAATGTGAGGCCTGTTCCGGTGGTGCTTGGTGACGGTCAATTGGTTGATTTATACCAACTTTTCTCCCTTGTGAAGGAAAACGGTGGGTATGATGTGGTATCGAGAAAAGGGCTGTGGGATTCGGTCATAGTTGAGCTGGGTTTGGAAATTCATTTCTTGGCTTCGATTAAATTGATTTATGATAAGTATTTGATTGGTTTCGAAGGCTGGCTCACAAAAACTTTGGATCTAGAGAAAGAATTCCGAAGCCTTTTGTGCTTGAATCTAAAGGACAAAGATGATCGTTTTGTCCCGTTTAAATCGAGTAATATCATCAAGCATATTGATTTGGTTAATCAAAAGATTGATGGTATTGGTGATGATGATAAAATGGTAACTGATGCTGTTAAGGAGGAGGATGACTGTTGCATGGAAATTTCTGCCGAGGAATTTAATTCTCGCAAACGTAAGCGAGAATCATTGTCAGGGATGGTACACTGGACCAGGCATATTGCAAAACATCCGATTGATCCGGCAACCGTACCATTACCAGAACCTTCAAAGTGGAAGGACTATAAAGGAGGTCAGGACTTTTTCCTTCAACTGCTGAAGGCAAGAGACATTCTCTCGGTGAGAAAGCATGCTGCACCAGGCAGTGGATCATCTTCCCAGAAGGTGAAGATGCATCCTGCCATGTATGAGGATCCTGTTGCTCTTGGTCACCAAAGTTCCAAGAAATTGAGATGTAGTGAAAGGCTTCCTGTCTCTGTTAAATCTCGCTGCAGTTGCTGCAATTCATTTCATGGTAATGGAAATAAATGTTCTCTGGAGAAAACACCAGCCAAACCAAACGGTGTGTCTGAAAAGAAAAAATCTGCTGCCAAACCGGATGTCACCGAGAAGAAAAAATCTGCTGCGAAACCGGATGTCACCGAGAAGAAAAAATCAACTGCCAAACCAGATGTAACTGAAAAGGAAAAATCAACTGCCAAACCAGATGTAGCAGTAAAGGAAAAATCTGATCCAACTAGTGATGATTCTCGTGAAAAGATTGTTTCTGTCGGTCATCGTTTCCAAGTGGAGGTCCCGGAATGGACTGGTGTAGCTTCTGAGAGTGACTCTAAATGGTTGGGCACACAAATTTGGCCTGTTAAAGATGACTCAAAAGCTACTACTGAAACTGATCTCGTTGGGAGAGGAAGAAGAGGAAAATGCAGGTGCAAAGTTCAACGTTCTGTTGACTGTGTCAGATTTCATATTGCTGAAAACAGGATGAAACTGAAGCTTGAATTGGGTTCTGTATTTTACCGATGGGGATTTGATCAAATGGGTGAGGAAGTTTCACTTCGATGGACTGCTGAAGAAGAAAAGAAATTTAAGGATGCAATGGGGTTAAATATCCCCTCCCAAAACAAGTCTTTCTGGAACAAGCCATCCAAATACTTTCAAAAGAAGACTAGAAAAGACATGGTGAACTATTACTTCAATGTATATCTTATTCAACTGAGAAGCTATCAGAATCGTGTCACTCCGGATGCTGTTGACAGTGATGACGATGAAGTTGAATTTGGATCTTTTGGTGATGGATTTGGGAGAAAAGCTATCAAGCATCCATATATGGAGTTTATGGAGTGTTCAGAGAACACACAGTGCTTTGATTTTGAGTAG 1824 0.4139 MANESSVDRVEAETFAEYRGNGGCVVEEHADSGDYDKAKQKSLFCQIFSVYLKEDCGKGNVRPVPVVLGDGQLVDLYQLFSLVKENGGYDVVSRKGLWDSVIVELGLEIHFLASIKLIYDKYLIGFEGWLTKTLDLEKEFRSLLCLNLKDKDDRFVPFKSSNIIKHIDLVNQKIDGIGDDDKMVTDAVKEEDDCCMEISAEEFNSRKRKRESLSGMVHWTRHIAKHPIDPATVPLPEPSKWKDYKGGQDFFLQLLKARDILSVRKHAAPGSGSSSQKVKMHPAMYEDPVALGHQSSKKLRCSERLPVSVKSRCSCCNSFHGNGNKCSLEKTPAKPNGVSEKKKSAAKPDVTEKKKSAAKPDVTEKKKSTAKPDVTEKEKSTAKPDVAVKEKSDPTSDDSREKIVSVGHRFQVEVPEWTGVASESDSKWLGTQIWPVKDDSKATTETDLVGRGRRGKCRCKVQRSVDCVRFHIAENRMKLKLELGSVFYRWGFDQMGEEVSLRWTAEEEKKFKDAMGLNIPSQNKSFWNKPSKYFQKKTRKDMVNYYFNVYLIQLRSYQNRVTPDAVDSDDDEVEFGSFGDGFGRKAIKHPYMEFMECSENTQCFDFE 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03560 607 SMART bright_3 39 132 IPR001606 GO:0003677
Vifa6g03560 607 MobiDBLite consensus disorder prediction 335 403 - -
Vifa6g03560 607 CDD SANT 502 549 IPR001005 -
Vifa6g03560 607 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 28 601 - -
Vifa6g03560 607 SMART ARID_2 35 127 - -
Vifa6g03560 607 Pfam ARID/BRIGHT DNA binding domain 58 127 IPR001606 GO:0003677
Vifa6g03560 607 ProSiteProfiles ARID domain profile. 38 131 IPR001606 GO:0003677
Vifa6g03560 607 SMART ELM2_2 404 459 IPR000949 -
Vifa6g03560 607 MobiDBLite consensus disorder prediction 324 403 - -
Vifa6g03560 607 SUPERFAMILY ARID-like 38 132 IPR036431 GO:0003677
Vifa6g03560 607 CDD ARID 58 127 - -
Vifa6g03560 607 Gene3D - 26 139 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03560 Vifa-Chr6 1170027310 1170030318 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vifa6g03560 ARID 1.7e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03560 - - psat:127105471 1109.75