Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03557 ATGGCAAATGGGTCTTCTCTTGATCGCCTTGAAGCTGAAACTTTTACTGATTTTCATGGAAACGGCAGTTGTCTTGTTGAGGATTGTGTTGATAGCACTGATCATGACAAAACTAAACAAAAATCTTTGTTTTGTAAATTTTTTTCCGTTTACCTTAAAGAGAATTGTAGTAGAGGCGATGTGAGGCATGTTCCGGTGATGCTCGGTGACGGTCAATTGCTTGATTTATACCAACTTTTCTCCCTTGTAAAGAAAAATGGTGGGTATGATGTGGTATCTAGAAAAGGGTTGTGGGATTCTGTGATAGTTGAACTGGGTTTGAACCTTCATGTTTTGGCTTCGGTCAAATTGATTTATGATAGATATCTAAATGATTTCGAAGGCTGGCTCAGCAAAACCAATCCAAAGAGTGATGGTAATGACGGTGAAGAAAAATTCTGTAATACGGATGATGATGTCTTGTGTGTGGAAATTTCTGCAGAGGAATTTCATTCTCCCAAATGCAAACGAGAGTCATTATCCGAAATGATAACCTGGATGAGGGATATTGCAAAACATCCGTTTGATCCTGCAGCCCAACCTTTACCAGAACCTTCAAAGTTGAAGGGGTGTAAAGGAGGTCAGAACTTCTCTGTTCAGATGCTAAAGGCAAGGGACGTTCTCTTGGTGAGAAAGCATTCAAAACCAAACAGTGGATCATCTTCCCAGAAGGTGAAGATACATCCTGCTATGTATGAGGATCCTGTTGCTCTTAGTCACCAAGGTACAAAGAAATTGAGATGTAGTGAAAGGATTTCTATCGCTGTTAAATCTCGCTGCACTTGCTGCAATTCATATCCTGGTAATGGACATGGATGTCATCTGGAGAAACCACCATCCAAACCAGGTGTAACCGGAAAAAAAAAATCAACTGCTAAACCTGTTGTAGCTGGAAAGAAAAAATCTAAGTCATATTGGGATGATGATCTTCATGAAACACTTGTTTCTATAGGTCATCGTTTTCAAGTGGAAGTCCCAGAATGGACTGGCGTAGCTTCTGAGAGTGACTCTAAATGGTTGGGCACACAAGTATGGCCTGTTAAAGATGATGACTCAAAAGCTACTACTGAAACAGATCTTGCTGGGAGAGGAAGACGAGGTAAGTGTAGCTGCAAAGTTCAAGGTTCTGTTGACTGTGTCAGATTTCATATTGCTGAAAACAGGATGAAACTGAAGCTTGAATTGGGTTATGTATTTTACCAATGTGGATTTGATCGAACGGGCGAGGGAGTTTCACTTCAATGGACAGCTGAAGAAGAAAAGAAATTCAAGGATTTAATGATGTTAAATATCCCCTCTGAAAAAAAGGCTTTTTGGAACAATTTTTGGAAGAATACATTCAAAAACTTTCAAATGAAGACAAGAAAAGACATGGTAAACTACTACTTCAATGTTTATCTTATTCAACAAAGAAGCTATCAGAATCGTGTGACTCCAAAGGATGTTGACAGCGATGATGATGGAGAAGAATTTGGATCATTTGGTGATGGATATGGGAGAAAAGCTATCAAGCATCCATTTATGGAGTTCATGGAGTGTTCAGAGAACACACAGTGTTTTGATTTTGAGTAG 1611 0.3929 MANGSSLDRLEAETFTDFHGNGSCLVEDCVDSTDHDKTKQKSLFCKFFSVYLKENCSRGDVRHVPVMLGDGQLLDLYQLFSLVKKNGGYDVVSRKGLWDSVIVELGLNLHVLASVKLIYDRYLNDFEGWLSKTNPKSDGNDGEEKFCNTDDDVLCVEISAEEFHSPKCKRESLSEMITWMRDIAKHPFDPAAQPLPEPSKLKGCKGGQNFSVQMLKARDVLLVRKHSKPNSGSSSQKVKIHPAMYEDPVALSHQGTKKLRCSERISIAVKSRCTCCNSYPGNGHGCHLEKPPSKPGVTGKKKSTAKPVVAGKKKSKSYWDDDLHETLVSIGHRFQVEVPEWTGVASESDSKWLGTQVWPVKDDDSKATTETDLAGRGRRGKCSCKVQGSVDCVRFHIAENRMKLKLELGYVFYQCGFDRTGEGVSLQWTAEEEKKFKDLMMLNIPSEKKAFWNNFWKNTFKNFQMKTRKDMVNYYFNVYLIQQRSYQNRVTPKDVDSDDDGEEFGSFGDGYGRKAIKHPFMEFMECSENTQCFDFE 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03557 536 Pfam ARID/BRIGHT DNA binding domain 51 127 IPR001606 GO:0003677
Vifa6g03557 536 Gene3D - 25 140 IPR036431 GO:0003677
Vifa6g03557 536 ProSiteProfiles ARID domain profile. 38 131 IPR001606 GO:0003677
Vifa6g03557 536 MobiDBLite consensus disorder prediction 290 309 - -
Vifa6g03557 536 SMART ARID_2 35 127 - -
Vifa6g03557 536 CDD ARID 57 127 - -
Vifa6g03557 536 SMART bright_3 39 132 IPR001606 GO:0003677
Vifa6g03557 536 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 32 530 - -
Vifa6g03557 536 SUPERFAMILY ARID-like 37 135 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03557 Vifa-Chr6 1169877778 1169881798 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vifa6g03557 ARID 4.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03557 - - psat:127100343 963.37