Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03541 ATGGATGAATCAACAGCTTTAATGATCTTAACGGCAATAGCGGCGTACATGATATGGTTCTTGTTCATCATACGGTCGTTAAAAGGTCCACGTGTCTGGCCCTTAGTAGGCAGTCTACCTGGTCTCATCCACCATGCCAACCGCATGCACGACTGGATCGCTGAAAATCTCCGCGCGTGTGGCGGCACGTACCAAACCTGCATCTGCGCCGTTCCATTTCTCGCTAGAAAACAGTGTCTCGTGACGGTCACGTGCGATCCCAAGAATCTTGAACACATACTCAAGCTCCGTTTCGATAATTACCCCAAAGGTCCTACGTGGCAGTCAGCGTTTCATGACTTGCTTGGAGAAGGTATCTTCAACACTGATGGTGACACGTGGCTGTTCCAGCGTAAGACTGCCGCACTGGAATTCACCACGAGGACCCTACGACAAGCCATGGCTCGTTGGGTTAGCCGAGCTATAAAGTTTCGATTCTGTCCAATTTTAGCCACGGCTCAGAAAGAAAACGTTCCGGTGGATCTTCAAGACCTTCTCCTCCGGCTCACTTTCGACAACATATGCGGCTTGGCTTTCGGTCAAGACCCTCAGACTCTAGCCGTCGGACTTCCGGAAAACGGCTTCGCGCTTTCCTTCGATCGCGCCACGGAAGCCACACTCCAACGGTTTATTTTACCTGAAATGGTGTGGAAGCTGAAGAAATGGCTTCGGCTTGGAATGGAAGTGAGCCTAACAAAGAGTCTAAAACACATCGATCAATATCTCTCAAAAATCATTCAAAACAGGAAGCTTGAGCTACAGAGTGGAAGTGAAGCGTTAAACGACGATCTTCTCTCGCGTTTCATGAAGAAGAAAGAGTCTTACTCTGAAGAGTTTCTTCAACACGTGGCACTCAATTTCATCCTCGCTGGACGTGACACGTCATCGGTTGCTCTCAGTTGGTTCTTCTGGCTCTGTATTAAAAATCCTCACGTGGAAGAGAAAATTCTGATCGAGCTTTGCACCGTTCTCATGGAGACACGTGGCGGAGATCTCACCAAATGGACAGATGAGCCTCTTGCTTTCGATGAAGTCGATCGTTTGGCTTACCTCAAAGCTGCTTTATCTGAGAGTTTACGTCTTTACCCTTCTGTTCCAGAGGATTCAAAGCATGTGGTGAACGACGACGTTTTGCCGAACGGAACCTTTGTTCCGGCGGGTTCAATGGTGACGTACTCGATTTACTCCGTCGGGAGGATGAAGTTCATTTGGGGTGAGGATTGTCTTGAGTTTAAACCTGAACGGTGGCTTTCAAACGACGGTGAAAATATGCAGGGATCGTACAAGTTTGTTTCGTTCAATGCAGGGCCGAGGATTTGCTTAGGGAAGGATTTGGCTTACTTGCAGATGAAGTCAATTGCCGCTGCTGTGCTGTTGCGCCACCGTTTGACGGTGGTGCCGGGACACCGTGTGGAGCAGAAGATGTCGTTGACGCTGTTCATGAAGTATGGGTTGATGGTGAATGTGCACCCGAGAGATCTTGCTCCGGTGGTGGAGAAGATAACCGGCAATTAA 1554 0.4897 MDESTALMILTAIAAYMIWFLFIIRSLKGPRVWPLVGSLPGLIHHANRMHDWIAENLRACGGTYQTCICAVPFLARKQCLVTVTCDPKNLEHILKLRFDNYPKGPTWQSAFHDLLGEGIFNTDGDTWLFQRKTAALEFTTRTLRQAMARWVSRAIKFRFCPILATAQKENVPVDLQDLLLRLTFDNICGLAFGQDPQTLAVGLPENGFALSFDRATEATLQRFILPEMVWKLKKWLRLGMEVSLTKSLKHIDQYLSKIIQNRKLELQSGSEALNDDLLSRFMKKKESYSEEFLQHVALNFILAGRDTSSVALSWFFWLCIKNPHVEEKILIELCTVLMETRGGDLTKWTDEPLAFDEVDRLAYLKAALSESLRLYPSVPEDSKHVVNDDVLPNGTFVPAGSMVTYSIYSVGRMKFIWGEDCLEFKPERWLSNDGENMQGSYKFVSFNAGPRICLGKDLAYLQMKSIAAAVLLRHRLTVVPGHRVEQKMSLTLFMKYGLMVNVHPRDLAPVVEKITGN 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03541 517 Gene3D Cytochrome P450 24 507 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g03541 517 Pfam Cytochrome P450 28 491 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g03541 517 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 446 455 IPR017972 GO:0005506|GO:0016705
Vifa6g03541 517 PANTHER CYTOCHROME P450 19 499 - -
Vifa6g03541 517 FunFam Cytochrome P450 22 508 - -
Vifa6g03541 517 SUPERFAMILY Cytochrome P450 19 505 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g03541 517 PRINTS P450 superfamily signature 453 464 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g03541 517 PRINTS P450 superfamily signature 366 377 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g03541 517 PRINTS P450 superfamily signature 444 453 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g03541 517 PRINTS P450 superfamily signature 303 320 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g03541 517 CDD CYP86A 67 498 - -
Vifa6g03541 517 PRINTS E-class P450 group I signature 312 338 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g03541 517 PRINTS E-class P450 group I signature 292 309 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g03541 517 PRINTS E-class P450 group I signature 365 383 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g03541 517 PRINTS E-class P450 group I signature 453 476 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g03541 517 PRINTS E-class P450 group I signature 443 453 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03541 Vifa-Chr6 1164743983 1164745536 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03541 1 514 Cytochrome P450 AT4G00360 74.808 0.0 810
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03541 K15398 - gmx:100792719 920.228
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03541 6 1164743983 1164745536 Vifa6g03541 6 1164743983 1164745536 ECH