LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa6g03540	ATGGCACCATGGTGGGGAAAGTCTTCGTCCAAAGAGGTGAAGAAGAAGAAGAAGACAAACCGGGAAAGTATATTTGATATGATACAGCGAAAATTGAAAAATGTTTCAGAAGTGAAAAGCAACTATAAATCAGGAGGGTCTCGAAGAAATCGTGATTGCAGTATCTCAAAGAAGGGATCTAGATCTTTTGGACCTTCAACAAGATCATCATCGTCCTCTCCAACTGTGTCCCGTTGTCTAAGTTTTGCAGACCATCATTATTCTCGGCCATACTCAGTGCCAGGCTCGCCCATTCATACTGTTATTAATGCAAGTTCTGGAATTATTTTAACATCAAAACTAGAAAGAGCCACAGAAGATCCTACATCTAGGCCATCTATATATTTTCCCCTTCCAGAACCTGGTTATCTGACTATGAAAATAGAAACAGAGCCACCATTAACAGACGCGGAAGGAGATCTAGTCACTGCATCTGTTTCCTGTGACAGCTCTATTGATAGTGGCGACTCATCTGATTCACATCTTGTTAGTCCTCTGGCATCTGACTGTGAAAATAGAAACAGAGCCACCATCAACACTTCTAAAAGTATGGCGAACAAAGATCAGTCACGGAGAGCATCCTCAAAACCAGGTCATAAACTGCGCAACAATAAGCCACTGTCTAGCTCGCCAAAAGGGGTTCCTTTGCATCTGCAAATAGGCCGTGCAGGTGGTTTTTGCAGTGCACCAGATAGTTCAATGTCTAGTCCTAGAAGTCCAATGCGAGCATTAGGTCCAGAGCAAATGCGAGCATTTGGTTCGGAGCAAATTCTAAATTCAGGATTATGGACAGGGAAGCCTTATCCAGATATAGCTTCTGGGCACTGCTATAGTCCAGTTTCAGGCCATAATTCTAGTAATAATTCTGTTGGTGGGGATCCGTCAGCATTTAGGGCACCCAACAAGTGTAGTGCTGAGTGTTCCCCAATACCTAGTCCCAGGTTGACAAGCCCTGGCCCCAATTCCAGGATACAGAGCAGTAATGTCAGCCCTCTGCATCCAAAGGCTGGAGGAGCAGCAGCAGAGTTGCCTACAAGAAGACCCGATGTCAATAAACAACAAAGTCATCGGTTACCACTTCCTCCAATAAAAGTGACTAAACCTTGTCCATTTTCTCCAACCTATTCTGTGTCTTCAACTCCTTCAGCCCCCAGAAGTCCTGCCAGACCAGAAAATTCAACAAGCCCAGGTTCACGCTGGACAAAAGGGCATTTGCTTGGAAGGGGAACATTTGGACATGTTTATCTTGGTTTCAGCAGAGAAAGTGGCGAGATGTGTGCAATGAAGGAGGTAACCCTTTTTTCAGATGACCCTAAATCACGGGAATGTGCGCAACAACTTACCCAAGAAATTGCACTGCTAAGTCAGTTGCGGCATCCAAACATAGTCCAGTATTATGGGTCTGAAACGGTAGATGACAGACTTTATATATACTTGGAGTACGTATCTGGTGGGTCTATCTATAAACTGCTTCAAGAATACGGACAGTTGGGTGAAATTGCAATTCGAAATTACACCCGGCAAATTCTTTCAGGACTTGCATATTTGCATGCAAAGAACACTGTTCACAGGGACATCAAAGGAGCAAACATATTGGTGGACCCTAATGGACACATAAAACTGGCAGATTTTGGGATGGCAAAGCATATAAGTGGGCAGTCTCTTGCATTTTCTTTTAAAGGAAGTCCTTACTGGATGGCACCTGAGGTTATAAGAAATTCAGGTGGTTGTAATCTTGCTGTCGATATATGGAGTCTGGGCTGCACTGTTCTGGAGATGGCAACAACAAAACCACCTTGGAGCCAATATGAAGGGGTTGCTGCTATGTTTAAGATTGGGAACAGCAGGGAACTTCCTAAAATTCCAGATCATCTATCAGAAGAAGGGAAAAGTTTTGTCAGGCTTTGTTTGCAAAGGGATCCACTAGATCGCCCTTCAGCTGGTCAACTTCTGGAGCACCCATTTGTTAAAAGTGCTTTTCTGGAAAGACAATTTCTGACGGCCGATCCTTCAGATTCTGTTATAAATGCAATGAGATCACTGGCCATTGGATCACCTAAACATACAGTATGTTTAGACTCGGAAGAAGTAGCTGGTATCCGCGGTATCCCTCCAGCAAGAAATTTCAGAACCGGTTATGAATCAAGTTATGCTCATAAAGGAAGGATTGTCTCATGTCCCGTTTCTCCATCAGATGTACTACGTGTGCCTCCCAGATATATGAATCCAAATGGCAGGATATCTCCCTCTCCAACGCCTAATCCTCATACCGCATCTGGCCCTTCTACTCCGCAAATCTGTAGATGTACTCCGCAAATCTGTAGATGTGGGACAAATCCATACTATCAATCAAAGCAACCTATATTCCCTCATGAAGCTCTGGGTATTATAATCCAGAAATCTCCTACTGGTAATCAGTCAAATGGAAGAACTGCTTGTCAATGTGAGTGTTCAAAGCATGGTCAGTTACAGAGAAATACAAAACCCACCATTCAGTCAAGTGGAGGAGCAGCTTGTCAATGTCAGTGTTCAAAGCATGGTCAGTTACAGAGAAATTCGAAACCCACCATTCAGTCAAGTGGAGGCGCAGCTTGTCAATGTCAATGTTCAAAGCATGGTCAGTTACAAAGAAATACAAAACCCACCATTCAGTCAAGTGGAGGCGCAGATTGTCAATGTCTGTGTTCAAATTGTCAATGTCTGTGTTCAAAGCATGGTCAGATTCAAAGAAATACGCAACCTAGACAACAACCTTGCTGCCGTCGGGATATAATTTCACCTGAAAATAATGCTCTTGCAAACCATAGTAGGAGGGCCGTAGAGGGAGGAGTCCCAAGAGAATCTCATAATGGGAGGTCGAGTAATTGTGTGCCTCGACAACAGCGGGTGAGAGATAATGCCCGGCCAAATCGCAAGTCAAGTGCACCAGTGGTTGGTCGCACTAATGGCTTGTGA	2994	0.4402	MAPWWGKSSSKEVKKKKKTNRESIFDMIQRKLKNVSEVKSNYKSGGSRRNRDCSISKKGSRSFGPSTRSSSSSPTVSRCLSFADHHYSRPYSVPGSPIHTVINASSGIILTSKLERATEDPTSRPSIYFPLPEPGYLTMKIETEPPLTDAEGDLVTASVSCDSSIDSGDSSDSHLVSPLASDCENRNRATINTSKSMANKDQSRRASSKPGHKLRNNKPLSSSPKGVPLHLQIGRAGGFCSAPDSSMSSPRSPMRALGPEQMRAFGSEQILNSGLWTGKPYPDIASGHCYSPVSGHNSSNNSVGGDPSAFRAPNKCSAECSPIPSPRLTSPGPNSRIQSSNVSPLHPKAGGAAAELPTRRPDVNKQQSHRLPLPPIKVTKPCPFSPTYSVSSTPSAPRSPARPENSTSPGSRWTKGHLLGRGTFGHVYLGFSRESGEMCAMKEVTLFSDDPKSRECAQQLTQEIALLSQLRHPNIVQYYGSETVDDRLYIYLEYVSGGSIYKLLQEYGQLGEIAIRNYTRQILSGLAYLHAKNTVHRDIKGANILVDPNGHIKLADFGMAKHISGQSLAFSFKGSPYWMAPEVIRNSGGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSRELPKIPDHLSEEGKSFVRLCLQRDPLDRPSAGQLLEHPFVKSAFLERQFLTADPSDSVINAMRSLAIGSPKHTVCLDSEEVAGIRGIPPARNFRTGYESSYAHKGRIVSCPVSPSDVLRVPPRYMNPNGRISPSPTPNPHTASGPSTPQICRCTPQICRCGTNPYYQSKQPIFPHEALGIIIQKSPTGNQSNGRTACQCECSKHGQLQRNTKPTIQSSGGAACQCQCSKHGQLQRNSKPTIQSSGGAACQCQCSKHGQLQRNTKPTIQSSGGADCQCLCSNCQCLCSKHGQIQRNTQPRQQPCCRRDIISPENNALANHSRRAVEGGVPRESHNGRSSNCVPRQQRVRDNARPNRKSSAPVVGRTNGL	997

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa6g03540	997	MobiDBLite	consensus disorder prediction	330	345	-	-
	Vifa6g03540	997	ProSitePatterns	Protein kinases ATP-binding region signature.	419	442	IPR017441	GO:0005524
	Vifa6g03540	997	MobiDBLite	consensus disorder prediction	161	228	-	-
	Vifa6g03540	997	Pfam	Protein kinase domain	414	669	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa6g03540	997	MobiDBLite	consensus disorder prediction	754	775	-	-
	Vifa6g03540	997	SUPERFAMILY	Protein kinase-like (PK-like)	411	670	IPR011009	-
	Vifa6g03540	997	ProSiteProfiles	Protein kinase domain profile.	413	669	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa6g03540	997	MobiDBLite	consensus disorder prediction	161	204	-	-
	Vifa6g03540	997	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	50	675	-	-
	Vifa6g03540	997	Gene3D	Transferase(Phosphotransferase) domain 1	411	693	-	-
	Vifa6g03540	997	MobiDBLite	consensus disorder prediction	384	413	-	-
	Vifa6g03540	997	MobiDBLite	consensus disorder prediction	321	417	-	-
	Vifa6g03540	997	FunFam	Mitogen-activated protein kinase kinase kinase	411	693	-	-
	Vifa6g03540	997	MobiDBLite	consensus disorder prediction	1	24	-	-
	Vifa6g03540	997	MobiDBLite	consensus disorder prediction	947	997	-	-
	Vifa6g03540	997	MobiDBLite	consensus disorder prediction	36	77	-	-
	Vifa6g03540	997	SMART	serkin_6	413	669	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa6g03540	997	MobiDBLite	consensus disorder prediction	57	77	-	-
	Vifa6g03540	997	CDD	STKc_MEKK1_plant	412	669	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa6g03540	Vifa-Chr6	1164176379	1164181096	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa6g03540	3	805	MAP Kinase Kinase Kinase	AT1G63700	55.825	0.0	759

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Vifa6g03540		Pkinase	1e-70	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa6g03540	K20717		-	gmx:100814422	1004.2