Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03536 ATGGCGCGAAGATCTCCCCGTCTGGTAAACCAAAAATGTGAAACAGGTTGCACATGGCGAATGTTCGGAATCTTTAACTTTCATGAAGCTCGTTCCGATAGAAGATTGGTTTCCAATGGTAGACATTTGAATAAACACACCACTGCTGCAGGAAATGGAAAATCCAGAATTAACTCGGATGTGCTTAGCACAGTTGATGAAAAGTACCCTCATGCTGCTGATGTAAGTTCGAGAAGAAAACGAGGTTTAAGTTGTAAGAATATCTGTGTGGAGGATAATCAGATTGCAGATTTGGAAAATGAAGTAACAAAAATGATTGTTAATCACAGTTTTTTCGACAGAAACTCTCGAGGAAAGGATGGTGCTGCTGACTGTCAGCCTAATCAGTTCTTAGACGCTGTACAGATTTTATATTCGAACAAGGAACTTTTTGTTAAGCTTCTGCAAGATCCAAACTCTCTGTTGGTGAAACAGATTCATGACTTACAGAAATCTCAAGTGAAAGCCGAACAAAATGGAATGACTAGATTGAATAAAGCTCAAAACAGTGGAAGTTTTTTTGATAGGTCTAACTCGAGTTCAAGAATAGTAGTTTTGAAGCCTAACACGAGTAATGTGAAAAAAATTGCTGAGAATAGCGATGCTCAAAGTAATAAGCCTTCGCATTTTCCATTTGGTGATATGAAGAGAAAGTTGAGACATGTCCTGAGAGTAAGGAGAAAAGAAAAGGAGTGGAGAACTGATTCGGCGCCAAGTAAATTTCCCTGCGGCTCACAGGACTTAGAAGATGGTATTTCTGTAAGAAATTCGCCAAATAAGGTCTGTGCTAGTACTGGCCACAAATTGATCATGAAGGATCAAGGTGCAAAAGTAACATCTCATAACAAACACCAAATGGTTCTAAGATCACCTCGTAGAGACGAGGAAAATTGTTCGTATAGAAATTCTTCTGCTCAGAAAATCAAGGATCCACCGGTGGCAACGTATTGTGATGAGTTACAGGTTTTTGGTGTTGCAGATATTAGTGTCAATAAGAGTCTTTCCGACGACAATTTGCATGAATATTATGATATTCCTAGAGATGGATCACTAGTACAAGCTATACATGATAAATTTGAAGAGAATAACCATCTTGCAGACCTTGTAACATTCTCTTCGGATCCAATGAACAAATCGAATGATATCATAAGTGAAGTTCTGCAGGCTTTCAGTTTGAAATGCGATGAACCGATAAAGAGTTATTTATCAAATCTATTGACGAATTCATCCACTTTCGATGAACTAAATGGATTAACTGACCAACTTTACGATAGTAAAATCCTGCATGACAGTATCATACAATGTTTCATGGACTTATACCAGAACAGTGGTTTTCTACCTCAATTTTCATCAAGAAATCCAAACTTCCTCCAAGCATGTGTTGAGAAGAAAATTCTGGTTAGAGAAATTAACGAACTTGTTAACCTGCACTTTGTCCCTCAGCCATCACCAATAACGTTACAGCAGGTTGTTGAAAAGGACTTTGCGAGACGTGGATTATGGATGAATATCCATGTTGATGCAGAAGATATTGCTATTGAAGTGGAGAAAGATGTTTTGGAAAAACTGATTTTGGAAATAGTGTCTGATATGAACATCAGAGACGTGATACAATGCAATGAAACTATGTCAAAATCATAA 1680 0.3774 MARRSPRLVNQKCETGCTWRMFGIFNFHEARSDRRLVSNGRHLNKHTTAAGNGKSRINSDVLSTVDEKYPHAADVSSRRKRGLSCKNICVEDNQIADLENEVTKMIVNHSFFDRNSRGKDGAADCQPNQFLDAVQILYSNKELFVKLLQDPNSLLVKQIHDLQKSQVKAEQNGMTRLNKAQNSGSFFDRSNSSSRIVVLKPNTSNVKKIAENSDAQSNKPSHFPFGDMKRKLRHVLRVRRKEKEWRTDSAPSKFPCGSQDLEDGISVRNSPNKVCASTGHKLIMKDQGAKVTSHNKHQMVLRSPRRDEENCSYRNSSAQKIKDPPVATYCDELQVFGVADISVNKSLSDDNLHEYYDIPRDGSLVQAIHDKFEENNHLADLVTFSSDPMNKSNDIISEVLQAFSLKCDEPIKSYLSNLLTNSSTFDELNGLTDQLYDSKILHDSIIQCFMDLYQNSGFLPQFSSRNPNFLQACVEKKILVREINELVNLHFVPQPSPITLQQVVEKDFARRGLWMNIHVDAEDIAIEVEKDVLEKLILEIVSDMNIRDVIQCNETMSKS 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03536 559 PANTHER ADHESIN-LIKE PROTEIN, PUTATIVE (DUF3741)-RELATED 1 92 - -
Vifa6g03536 559 Pfam Protein of unknown function (DUF3741) 125 153 IPR022212 -
Vifa6g03536 559 Pfam Domain of unknown function (DUF4378) 396 539 IPR025486 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03536 Vifa-Chr6 1163361208 1163363286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03536 394 551 TRM (TON1 Recruiting Motif) Superfamily AT2G45900 30.625 1.48e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03536 - - psat:127105558 916.376