Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03533 ATGGTGCTGCAAAACATGAAGGAGCAACTTGCTTTGGCGGTTAGAAGTATTCAATGGAGCTATGTGATCTTCTGGTCTGAATCTGTTAACCAACCAGGGGTGTTGAGTTGGGGGGAAGGATATTACAATGGAGATATTAAGACAAGGAAAACAAGTCAAGGAGTGGAACTTAGTTCCGACGAAATCGGCTTACAGAGGAGTGAGCAATTGAGAGAGCTGTTTGGGACTCTGAAACCTGTAGAAACAAGTCCTCCAACAAAAAGGCCTTCTGCAGCACTGTCACCAGAAGATCTCTCCGATACTGAGTGGTATTATTTGGTTTGCATGTCCTTTGTATTCAACATTGGCCAAGGGTTACCAGGAAGAACTCTAGCAAATGGCCAACCAATTTGGCTGATCAATGCTTATTCTACTGATTGCAAAGTGTTTAGTCGCGCTCTCCTCGCAAAGACAGTGGTGTGTTTTCCTTTTATGAACGGGGTTATTGAGCTAGGCACAACTGATCTAGTAATGGAAGATCTCAGTCTCATTCAACAGATCAAAACTTCTTTATCCAATATTCTAACTGTCAATGATGATCCTATTAACGTTCGAGCTACATTGCATCCAAGAAATAACGAAGATGTTGCTTGTGTGGCAGCGTTTGATCATGATGACTATAATGTTGAATATGACATAATGAATAGAACAACCTCTCCTAATGGCAGTTCAAATGCATTACAAACCAATCAACTACGAGATATGGTTGAAAGCTGGCATGTTATCGAAGATGATTTGAGCAATTGTGTCCATAACTCCGTGAATTCAAGTGACTGCATATCACAAACTATTGCTTCTGCTCCTAAGGGTAGAGGAGAAGATTGCAACAATGACCAAAAAATGACCTTAGTGGATCCCTTAAGTGAGGATTGGCACTATCAGAAAATTCTTGCAGCGCTTTTGAAAAGCAATGACCAAATAACAATGGAGATGCATTTTCAAAACTTTCATCAGGAATCAAGCTTTTGTGTTTGGAACAAAGGAGGGGCATTGGATTGTCATAGGCCAAGACAAGGAACTTCACAAAAGTTATTGAAGAAGATCTTGTTTGAAGTTCCGCGGATGCACATGGATGGTTTGGTTGAATCTCAAGAAGAGAATGACTATAGAGAGGGACCGAGACTCGAGACTGATGAAGGTATGAACCATGTTTTGTCTGAAAGAAGAAGAAGAGCAAAACTAAATGAAAGGTTTTTAACCCTTAGATCAATGGTCCCTTCAAATAGTAAGGATGACAAAGTTTCTATACTAGACGATGCAATTGAATACCTTCGAAAGCTCGAGAAAAGGATAAAAGATATGCAAGGTCAAAGAGAGCCAATAGATATAGAGTCTAGAAGTAAAAGAACACATCACGATATGATGGAGAGGACTTCTGATCATTATTATAACAACAAAACGAACAATGGCAAGAAACCGATGGTGAAAAAGAGGAAAATATGCAACATAGACGAGACGAGAGTGATTTACTCAGATGCTTTGAAAGGAAGTTCTACTAGTGATGTTACTGTCAAAATGAGCGACAATGGAGTCGTAATTGAAATGAAGTGCCCTTGTAGATCAGGAAGAATATTGGAAATTATGGAAGCAGTTAACAATCTCAACATAGATTTTAATTCAGTTCAATCCACAGAAGCAGATGGGAGTCTTCATCTGATCATTAAATCTAAGTTTACAGGATTAACTAATGCAACAGCAAAAAGGATCAAACAAGTCCTCCATAAAGTGGCTTCAAAGTTTTGA 1782 0.3917 MVLQNMKEQLALAVRSIQWSYVIFWSESVNQPGVLSWGEGYYNGDIKTRKTSQGVELSSDEIGLQRSEQLRELFGTLKPVETSPPTKRPSAALSPEDLSDTEWYYLVCMSFVFNIGQGLPGRTLANGQPIWLINAYSTDCKVFSRALLAKTVVCFPFMNGVIELGTTDLVMEDLSLIQQIKTSLSNILTVNDDPINVRATLHPRNNEDVACVAAFDHDDYNVEYDIMNRTTSPNGSSNALQTNQLRDMVESWHVIEDDLSNCVHNSVNSSDCISQTIASAPKGRGEDCNNDQKMTLVDPLSEDWHYQKILAALLKSNDQITMEMHFQNFHQESSFCVWNKGGALDCHRPRQGTSQKLLKKILFEVPRMHMDGLVESQEENDYREGPRLETDEGMNHVLSERRRRAKLNERFLTLRSMVPSNSKDDKVSILDDAIEYLRKLEKRIKDMQGQREPIDIESRSKRTHHDMMERTSDHYYNNKTNNGKKPMVKKRKICNIDETRVIYSDALKGSSTSDVTVKMSDNGVVIEMKCPCRSGRILEIMEAVNNLNIDFNSVQSTEADGSLHLIIKSKFTGLTNATAKRIKQVLHKVASKF 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03533 593 Gene3D - 389 451 IPR036638 GO:0046983
Vifa6g03533 593 SMART finulus 397 446 IPR011598 GO:0046983
Vifa6g03533 593 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 391 440 IPR011598 GO:0046983
Vifa6g03533 593 PANTHER TRANSCRIPTION FACTOR TT8 4 591 - -
Vifa6g03533 593 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 6 182 IPR025610 -
Vifa6g03533 593 Pfam Helix-loop-helix DNA-binding domain 395 441 IPR011598 GO:0046983
Vifa6g03533 593 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 394 456 IPR036638 GO:0046983
Vifa6g03533 593 Coils Coil 430 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03533 Vifa-Chr6 1161434209 1161437292 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03533 2 590 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 42.266 5.25e-157 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa6g03533 bHLH-MYC_N 2.5e-44 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03533 - - gmx:100808167 781.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03533 6 1161434209 1161437292 Vifa6g03533 6 1161434209 1161437292 ECH