Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03532 ATGGTGCTGCAAAACATGAAGGAGCAACTTGCTTTGGCGGTTAGAAGTATTCAATGGAGCTATGTGATCTTCTGGTCTGAATCTGTTAACCAACCAGGGGTGTTGAGTTGGGGGGAAGGATATTACAATGGAGATATTAAGACAAGGAAAACAAGTCAAGGAGTGGAACTTAGTTCCGACGAAATCGGCTTACAGAGGAGTGAGCAATTGAGAGAGCTGTTTGGGACTCTGAAACCTGTAGAAACAAGTCCTCCAACAAAAAGGCCTTCTGCAGCACTGTCACCAGAAGATCTCTCCGATACTGAGTGGTATTATTTGGTTTGCATGTCCTTTGTATTCAACATTGGCCAAGGGTTACCAGGAAGAACTCTAGCAAATGGCCAACCAATTTGGCTGATCAATGCTTATTCTACTGATTGCAAAGTGTTTAGTCGCGCTCTCCTCGCAAAGAGTGCGTCTATTCAGACAGTGGTGTGTTTTCCTTTTATGAACGGGGTTATTGAGCTAGGCACAACTGATCTAGTAATGGAAGATCTCAGTCTCATTCAACAGATCAAAACTTCTTTATCCAATATTCTAACTGTCAATGATGATCCTATTAACGTTCGAGCTACATTGCATCCAAGAAATAACGAAGATGTTGCTTGTGTGGCAGCGTTTGATCATGATGACTATAATGTTGAATATGACATAATGAATAGAACAACCTCTCCTAATGGCAGTTCAAATGCATTACAAACCAATCAACTACGAGATATGGTTGAAAGCTGGCATGTTATCGAAGATGATTTGAGCAATTGTGTCCATAACTCCGTGAATTCAAGTGACTGCATATCACAAACTATTGCTTCTGCTCCTAAGGGTAGAGGAGAAGATTGCAACAATGACCAAAAAATGACCTTAGTGGATCCCTTAAGTGAGGATTGGCACTATCAGAAAATTCTTGCAGCGCTTTTGAAAAGCAATGACCAAATAACAATGGAGATGCATTTTCAAAACTTTCATCAGGAATCAAGCTTTTGTGTTTGGAACAAAGGAGGGGCATTGGATTGTCATAGGCCAAGACAAGGAACTTCACAAAAGTTATTGAAGAAGATCTTGTTTGAAGTTCCGCGGATGCACATGGATGGTTTGGTTGAATCTCAAGAAGAGAATGACTATAGAGAGGGACCGAGACTCGAGACTGATGAAGGTATGAACCATGTTTTGTCTGAAAGAAGAAGAAGAGCAAAACTAAATGAAAGGTTTTTAACCCTTAGATCAATGGTCCCTTCAAATAGTAAGGATGACAAAGTTTCTATACTAGACGATGCAATTGAATACCTTCGAAAGCTCGAGAAAAGGATAAAAGATATGCAAGGTCAAAGAGAGCCAATAGATATAGAGTCTAGAAGTAAAAGAACACATCACGATATGATGGAGAGGACTTCTGATCATTATTATAACAACAAAACGAACAATGGCAAGAAACCGATGGTGAAAAAGAGGAAAATATGCAACATAGACGAGACGAGAGTGATTTACTCAGATGCTTTGAAAGGAAGTTCTACTAGTGATGTTACTGTCAAAATGAGCGACAATGGAGTCGTAATTGAAATGAAGTGCCCTTGTAGATCAGGAAGAATATTGGAAATTATGGAAGCAGTTAACAATCTCAACATAGATTTTAATTCAGTTCAATCCACAGAAGCAGATGGGAGTCTTCATCTGATCATTAAATCTAAGTTTACAGGATTAACTAATGCAACAGCAAAAAGGATCAAACAAGTCCTCCATAAAGTGGCTTCAAAGTTTTGA 1797 0.3923 MVLQNMKEQLALAVRSIQWSYVIFWSESVNQPGVLSWGEGYYNGDIKTRKTSQGVELSSDEIGLQRSEQLRELFGTLKPVETSPPTKRPSAALSPEDLSDTEWYYLVCMSFVFNIGQGLPGRTLANGQPIWLINAYSTDCKVFSRALLAKSASIQTVVCFPFMNGVIELGTTDLVMEDLSLIQQIKTSLSNILTVNDDPINVRATLHPRNNEDVACVAAFDHDDYNVEYDIMNRTTSPNGSSNALQTNQLRDMVESWHVIEDDLSNCVHNSVNSSDCISQTIASAPKGRGEDCNNDQKMTLVDPLSEDWHYQKILAALLKSNDQITMEMHFQNFHQESSFCVWNKGGALDCHRPRQGTSQKLLKKILFEVPRMHMDGLVESQEENDYREGPRLETDEGMNHVLSERRRRAKLNERFLTLRSMVPSNSKDDKVSILDDAIEYLRKLEKRIKDMQGQREPIDIESRSKRTHHDMMERTSDHYYNNKTNNGKKPMVKKRKICNIDETRVIYSDALKGSSTSDVTVKMSDNGVVIEMKCPCRSGRILEIMEAVNNLNIDFNSVQSTEADGSLHLIIKSKFTGLTNATAKRIKQVLHKVASKF 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03532 598 Coils Coil 435 455 - -
Vifa6g03532 598 Gene3D - 394 456 IPR036638 GO:0046983
Vifa6g03532 598 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 399 461 IPR036638 GO:0046983
Vifa6g03532 598 SMART finulus 402 451 IPR011598 GO:0046983
Vifa6g03532 598 Pfam Helix-loop-helix DNA-binding domain 400 446 IPR011598 GO:0046983
Vifa6g03532 598 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 396 445 IPR011598 GO:0046983
Vifa6g03532 598 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 6 187 IPR025610 -
Vifa6g03532 598 PANTHER TRANSCRIPTION FACTOR TT8 4 596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03532 Vifa-Chr6 1161434209 1161437292 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03532 2 595 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 42.573 2.23e-161 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa6g03532 bHLH-MYC_N 7e-50 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03532 - - gmx:100808167 795.038