Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03529 ATGCAGTGGGAACCGGAGGGAGGTGGAAAAGTTGCCGGACTTGCGGGTGGCCGGCTTGTGTCTTTCATTAAGTGGATAAATGCCGAGCTTCCTGACTTTAATCTGCCTTTAGAAACTTCGGAAGAGGAATTGAGGCTATGCTTGAGTGATGGATTGGTATTGTGTAGCATTTTGGACAAGCTGGTTCCTGGTTCACTCCAGGGAAGTGGTTCTTTGAATGAGGTGACGGATGTTGAAAGGTTTTTGGTAGCCTTGGATGAATTGGGATTGCCAGGATTTGAATTGTCAGACTTGGAGCAGGGATTGATGGTGCCCGTGTTGCAGTGCCTTGAGAATCTGAAAGCTCACTTTGTATATAATGCTGCACGTGAAAATGTCCAAAGTTATTCTAGAAAGAGATGGGACCAGCCAGACCTAACATCCCTAGCTGAAACTGATAGTTGCCTCAAGGATGCTTCAAATTTCCAACATGCTATTGATGACTCTGTTGTATCAGATGGAATTGCTTCCATTGATCATATTGGATTCAAGTCTAATGAACTGTTGCAGTTGAAACAAGGACTACACGTGGATCTTTCAGATGCCAAACTTAATGAACTATTGAAATCAAACAATTTGGACAGTATCTCATCTCGATTTCTTTTTAACATACTAAATAGGATCCTAAGTGATATCTTTGAAAGGAAGAATGGAGATATACCTCAAGCTCAGCGTGCAGCATGCCTGTTGAGAAAGATTCTGCAAGTAATTGAGTTACGCTTTTCAAATCAAGCAGAAAGCATGAAAAATCAAAACAATATTTTCAAGGCTCGTGAGGGAAAGTATCAAACAAAACTAAACGCGGTTGAAACCTTGGCGGTAGGGACAACTGAAGAGAATGAGCTTGTGACAGGTTGGGTTCAGAAGTTGAAGCTTGAACAAACTAAATTTGAGGAAAAGAAGAAACTCGAAGAGCAGGATTTTTCCCAATTAAAGAAAGACAAAGTTCGCAGTGATATTGAAATTGCTGCATTGAAACAAGATTTGCAAATGGCAAAAAGATCACATGAAGAACATGTTTTGCAGTTAGAATTGCAAGCTTCTGAATCTAAAGCTGAATATGAGAAAAGGATACAAGAACTTAAATTTCATCTTGCTGATGCGAGAAAGCAAGTGAAGGAACTGGAGGCATTTTCGGAATCCAGATATTTGAATTGGAAGAATAAAGAGCATACCTATCAAAGTTTCTTAAATCAACAATTTGGAGCTTTTAAGGAACTGAAAGCTGTCATGAAATCTGTCAAAGATGAAGTGATAAAAACAAAAAGAAGCTACTCGGAGGAATACAAGTACTTTGGAATCAAGCTCAAAGGTCTAGCCGAGGCTGCTGATAATTATCACGTTCTTCTAACAGAAAATAGGAAATTATATAACGAAGTTCAAGATTTGAAAGGAAATATCAGGGTATATTGTCGAATTAGACCATTTCTTTCTGGGCAAAGTCAGAAACATACAACAGTCGAGTTTATTGGTGAAAACGGAGAACTAATTATTAACAATCCTCTTAAACAAGGAAAAGAAAGCCGCAAGCCTTTTAAATTTAATAAAGTTTTTGGTCCAGCAGCGCGTCAAGAGGAAGTATTCTTGGACACTCGACCGCTAATTCGTTCTGTTCTTGATGGGTTCAATGTTTGTATATTCGCTTACGGTCAAACTGGCTCAGGAAAGACTTATACCATGAGTGGACCTAACCTATCATCAAAATCAGATTGGGGAGTCAACTATAGAGCACTTCATGATCTTTTCCATATCTCCCAGAGTAGGGAAAATTCAATTGTTTACGAAATTGGAGTTCAAATGGTTGAGATTTATAATGAACAATTTCATTTCCTTGACTTGCACACACTTGGGATTTGGAATACTACCCAACCAAATGGGTTGGCTGTTCCTGATGCGAGTATGCATTCTGTGAAGTCTATGAAAGATGTCCTTGAGTTGATGAACACCGGGTTGACGAATCGGGCTACTAGTGCTACAGCCCTAAACGAAAGAAGTAGTAGATCACACAGTGTTCTCTCTATTCATGTTCGAGGAACGGAAGTGAAGACCAACACTCTGTTGCGTGGATGTCTGCATCTTGTAGATCTTGCGGGAAGTGAAAGAGTGGATCGTTCTGAAGCAACTGGAGATAGGCTTAAGGAGGCTCAGCATATAAACAAATCACTATCTGCACTTGGAGATGTAATAAATGCTCTGTCTCAAAAGAGCCAACATGTGCCATATAGAAATAGCAAATTGACTCAACTCCTTCAGAGTTCGTTAGGCGGTCAAGCAAAAACCCTTATGTTTGTACAGCTTAATCCGGATGTTGCTTCATACTCTGAAACTATAAGCACTTTGAAGTTTGCTGAAAGAGTTTCTGGTGTTGAGTTAGGCGCGGCTCGAAGCAACAAAGAGGGAAGGGATGTGAGAGAACTAATGGAACAGATGACATCTCTCAAGGAAGTTATGGCAAGGAAGGATGAAGAGATTGAGCGGTTGCAGTTGCTCAAGTCTAATCATAATGGTGCAAAACTTGGAATGATCTCACCAAGACACCTGCCATCATCCCCAAGGAGACATTCCGTAGGGACTCCCCACAACAGCACAAGACTTTCCGGCACAAGGAGCCTGGGGGTCAATGAAAAAACAGCTTCTGACATGGATAACGGCTCAGAGTACAGTGATAAGCATTCGGAAGCTGGTTCTCATCAATCAATGGATGATTTCAGGAACAAGCCCAGTTCCCTTCGGTTGAAATTAGCTCGAGAAGACGCTGATCAAAATTTCAACGAGGACATTGAACTCTTAAGATTCGGAGATGCTGATTCGGAGGAGAGATTAAGTGACATATCTGACGGTGGTCTTTCAATGGGAACAGAAACTGATGGTTCAATCAGCAGTATTGTGGAGTACACTCTTTTCCCTGACCTTGACATGGCAGCTGAAACTCCACCAGCTAAGGATATGACATCCAACAAACTTCCATCTCAGAGTGCGGAAAAGTCCAATATGCCATCAAGAATTCCCAAAGCTCCGCAAGTCCAACCAAAACTGCCGACAAAAACTTCTAGGCTATCGTTAAACAAAAGCACTTCAAAGGTTTCATCAAGTATTAAAAAACCGACAGTCGGTAGCTCTTCTGCAGCTTCGGCAAGATCCTCTAAACGATGGCAATAG 3198 0.4109 MQWEPEGGGKVAGLAGGRLVSFIKWINAELPDFNLPLETSEEELRLCLSDGLVLCSILDKLVPGSLQGSGSLNEVTDVERFLVALDELGLPGFELSDLEQGLMVPVLQCLENLKAHFVYNAARENVQSYSRKRWDQPDLTSLAETDSCLKDASNFQHAIDDSVVSDGIASIDHIGFKSNELLQLKQGLHVDLSDAKLNELLKSNNLDSISSRFLFNILNRILSDIFERKNGDIPQAQRAACLLRKILQVIELRFSNQAESMKNQNNIFKAREGKYQTKLNAVETLAVGTTEENELVTGWVQKLKLEQTKFEEKKKLEEQDFSQLKKDKVRSDIEIAALKQDLQMAKRSHEEHVLQLELQASESKAEYEKRIQELKFHLADARKQVKELEAFSESRYLNWKNKEHTYQSFLNQQFGAFKELKAVMKSVKDEVIKTKRSYSEEYKYFGIKLKGLAEAADNYHVLLTENRKLYNEVQDLKGNIRVYCRIRPFLSGQSQKHTTVEFIGENGELIINNPLKQGKESRKPFKFNKVFGPAARQEEVFLDTRPLIRSVLDGFNVCIFAYGQTGSGKTYTMSGPNLSSKSDWGVNYRALHDLFHISQSRENSIVYEIGVQMVEIYNEQFHFLDLHTLGIWNTTQPNGLAVPDASMHSVKSMKDVLELMNTGLTNRATSATALNERSSRSHSVLSIHVRGTEVKTNTLLRGCLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVINALSQKSQHVPYRNSKLTQLLQSSLGGQAKTLMFVQLNPDVASYSETISTLKFAERVSGVELGAARSNKEGRDVRELMEQMTSLKEVMARKDEEIERLQLLKSNHNGAKLGMISPRHLPSSPRRHSVGTPHNSTRLSGTRSLGVNEKTASDMDNGSEYSDKHSEAGSHQSMDDFRNKPSSLRLKLAREDADQNFNEDIELLRFGDADSEERLSDISDGGLSMGTETDGSISSIVEYTLFPDLDMAAETPPAKDMTSNKLPSQSAEKSNMPSRIPKAPQVQPKLPTKTSRLSLNKSTSKVSSSIKKPTVGSSSAASARSSKRWQ 1065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03529 1065 Gene3D - 18 118 IPR036872 -
Vifa6g03529 1065 MobiDBLite consensus disorder prediction 867 894 - -
Vifa6g03529 1065 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 479 840 IPR027417 -
Vifa6g03529 1065 ProSiteProfiles Calponin homology (CH) domain profile. 16 118 IPR001715 GO:0005515
Vifa6g03529 1065 PANTHER KINESIN-LIKE PROTEIN KLP-3 310 1027 IPR027640 GO:0003777|GO:0007018
Vifa6g03529 1065 SMART ch_5 18 113 IPR001715 GO:0005515
Vifa6g03529 1065 MobiDBLite consensus disorder prediction 996 1011 - -
Vifa6g03529 1065 SMART kinesin_4 477 810 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g03529 1065 MobiDBLite consensus disorder prediction 895 917 - -
Vifa6g03529 1065 MobiDBLite consensus disorder prediction 848 917 - -
Vifa6g03529 1065 MobiDBLite consensus disorder prediction 988 1065 - -
Vifa6g03529 1065 SUPERFAMILY Calponin-homology domain, CH-domain 21 117 IPR036872 -
Vifa6g03529 1065 ProSiteProfiles Kinesin motor domain profile. 479 802 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g03529 1065 MobiDBLite consensus disorder prediction 1023 1065 - -
Vifa6g03529 1065 Coils Coil 339 359 - -
Vifa6g03529 1065 PRINTS Kinesin heavy chain signature 554 575 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g03529 1065 PRINTS Kinesin heavy chain signature 703 721 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g03529 1065 PRINTS Kinesin heavy chain signature 752 773 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g03529 1065 PRINTS Kinesin heavy chain signature 672 689 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g03529 1065 Coils Coil 816 846 - -
Vifa6g03529 1065 Pfam Calponin homology (CH) domain 22 117 IPR001715 GO:0005515
Vifa6g03529 1065 Coils Coil 364 391 - -
Vifa6g03529 1065 Coils Coil 300 320 - -
Vifa6g03529 1065 Gene3D Kinesin motor domain 420 804 IPR036961 -
Vifa6g03529 1065 FunFam p-loop containing nucleoside triphosphate hydrolases superfamily protein 421 804 - -
Vifa6g03529 1065 Pfam Kinesin motor domain 485 800 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03529 Vifa-Chr6 1160579964 1160591595 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03529 447 802 Calmodulin-binding Proteins AT5G65930 41.033 5.43e-71 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03529 K10406 - gmx:100812813 1632.46