Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03528 ATGCAGTGGGAACCGGAGGGAGGTGGAAAAGTTGCCGGACTTGCGGGTGGCCGGCTTGTGTCTTTCATTAAGTGGATAAATGCCGAGCTTCCTGACTTTAATCTGCCTTTAGAAACTTCGGAAGAGGAATTGAGGCTATGCTTGAGTGATGGATTGGTATTGTGTAGCATTTTGGACAAGCTGGTTCCTGGTTCACTCCAGGGAAGTGGTTCTTTGAATGAGGTGACGGATGTTGAAAGGTTTTTGGTAGCCTTGGATGAATTGGGATTGCCAGGATTTGAATTGTCAGACTTGGAGCAGGGATTGATGGTGCCCGTGTTGCAGTGCCTTGAGAATCTGAAAGCTCACTTTGTATATAATGCTGCACGTGAAAATGTCCAAAGTTATTCTAGAAAGAGATGGGACCAGCCAGACCTAACATCCCTAGCTGAAACTGATAGTTGCCTCAAGGATGCTTCAAATTTCCAACATGCTATTGATGACTCTGTTGTATCAGATGGAATTGCTTCCATTGATCATATTGGATTCAAGTCTAATGAACTGTTGCAGTTGAAACAAGGACTACACGTGGATCTTTCAGATGCCAAACTTAATGAACTATTGAAATCAAACAATTTGGACAGTATCTCATCTCGATTTCTTTTTAACATACTAAATAGGATCCTAAGTGATATCTTTGAAAGGAAGAATGGAGATATACCTCAAGCTCAGCGTGCAGCATGCCTGTTGAGAAAGATTCTGCAAGTAATTGAGTTACGCTTTTCAAATCAAGCAGAAAGCATGAAAAATCAAAACAATATTTTCAAGGCTCGTGAGGGAAAGTATCAAACAAAACTAAACGCGGTTGAAACCTTGGCGGTAGGGACAACTGAAGAGAATGAGCTTGTGACAGGTTGGGTTCAGAAGTTGAAGTTTTCTTTGCAGCTTGAACAAACTAAATTTGAGGAAAAGAAGAAACTCGAAGAGCAGGATTTTTCCCAATTAAAGAAAGACAAAGTTCGCAGTGATATTGAAATTGCTGCATTGAAACAAGATTTGCAAATGGCAAAAAGATCACATGAAGAACATGTTTTGCAGTTAGAATTGCAAGCTTCTGAATCTAAAGCTGAATATGAGAAAAGGATACAAGAACTTAAATTTCATCTTGCTGATGCGAGAAAGCAAGTGAAGGAACTGGAGGCATTTTCGGAATCCAGATATTTGAATTGGAAGAATAAAGAGCATACCTATCAAAGTTTCTTAAATCAACAATTTGGAGCTTTTAAGGAACTGAAAGCTGTCATGAAATCTGTCAAAGATGAAGTGATAAAAACAAAAAGAAGCTACTCGGAGGAATACAAGTACTTTGGAATCAAGCTCAAAGGTCTAGCCGAGGCTGCTGATAATTATCACGTTCTTCTAACAGAAAATAGGAAATTATATAACGAAGTTCAAGATTTGAAAGGAAATATCAGGGTATATTGTCGAATTAGACCATTTCTTTCTGGGCAAAGTCAGAAACATACAACAGTCGAGTTTATTGGTGAAAACGGAGAACTAATTATTAACAATCCTCTTAAACAAGGAAAAGAAAGCCGCAAGCCTTTTAAATTTAATAAAGTTTTTGGTCCAGCAGCGCGTCAAGAGGAAGTATTCTTGGACACTCGACCGCTAATTCGTTCTGTTCTTGATGGGTTCAATGTTTGTATATTCGCTTACGGTCAAACTGGCTCAGGAAAGACTTATACCATGAGTGGACCTAACCTATCATCAAAATCAGATTGGGGAGTCAACTATAGAGCACTTCATGATCTTTTCCATATCTCCCAGAGTAGGGAAAATTCAATTGTTTACGAAATTGGAGTTCAAATGGTTGAGATTTATAATGAACAATTTCATTTCCTTGACTTGCACACACTTGGGATTTGGAATACTACCCAACCAAATGGGTTGGCTGTTCCTGATGCGAGTATGCATTCTGTGAAGTCTATGAAAGATGTCCTTGAGTTGATGAACACCGGGTTGACGAATCGGGCTACTAGTGCTACAGCCCTAAACGAAAGAAGTAGTAGATCACACAGTGTTCTCTCTATTCATGTTCGAGGAACGGAAGTGAAGACCAACACTCTGTTGCGTGGATGTCTGCATCTTGTAGATCTTGCGGGAAGTGAAAGAGTGGATCGTTCTGAAGCAACTGGAGATAGGCTTAAGGAGGCTCAGCATATAAACAAATCACTATCTGCACTTGGAGATGTAATAAATGCTCTGTCTCAAAAGAGCCAACATGTGCCATATAGAAATAGCAAATTGACTCAACTCCTTCAGAGTTCGTTAGGCGGTCAAGCAAAAACCCTTATGTTTGTACAGCTTAATCCGGATGTTGCTTCATACTCTGAAACTATAAGCACTTTGAAGTTTGCTGAAAGAGTTTCTGGTGTTGAGTTAGGCGCGGCTCGAAGCAACAAAGAGGGAAGGGATGTGAGAGAACTAATGGAACAGATGACATCTCTCAAGGAAGTTATGGCAAGGAAGGATGAAGAGATTGAGCGGTTGCAGTTGCTCAAGTCTAATCATAATGGTGCAAAACTTGGAATGATCTCACCAAGACACCTGCCATCATCCCCAAGGAGACATTCCGTAGGGACTCCCCACAACAGCACAAGACTTTCCGGCACAAGGAGCCTGGGGGTCAATGAAAAAACAGCTTCTGACATGGATAACGGCTCAGAGTACAGTGATAAGCATTCGGAAGCTGGTTCTCATCAATCAATGGATGATTTCAGGAACAAGCCCAGTTCCCTTCGGTTGAAATTAGCTCGAGAAGACGCTGATCAAAATTTCAACGAGGACATTGAACTCTTAAGATTCGGAGATGCTGATTCGGAGGAGAGATTAAGTGACATATCTGACGGTGGTCTTTCAATGGGAACAGAAACTGATGGTTCAATCAGCAGTATTGTGGAGTACACTCTTTTCCCTGACCTTGACATGGCAGCTGAAACTCCACCAGCTAAGGATATGACATCCAACAAACTTCCATCTCAGAGTGCGGAAAAGTCCAATATGCCATCAAGAATTCCCAAAGCTCCGCAAGTCCAACCAAAACTGCCGACAAAAACTTCTAGGCTATCGTTAAACAAAAGCACTTCAAAGGTTTCATCAAGTATTAAAAAACCGACAGTCGGTAGCTCTTCTGCAGCTTCGGCAAGATCCTCTAAACGATGGCAATAG 3210 0.4106 MQWEPEGGGKVAGLAGGRLVSFIKWINAELPDFNLPLETSEEELRLCLSDGLVLCSILDKLVPGSLQGSGSLNEVTDVERFLVALDELGLPGFELSDLEQGLMVPVLQCLENLKAHFVYNAARENVQSYSRKRWDQPDLTSLAETDSCLKDASNFQHAIDDSVVSDGIASIDHIGFKSNELLQLKQGLHVDLSDAKLNELLKSNNLDSISSRFLFNILNRILSDIFERKNGDIPQAQRAACLLRKILQVIELRFSNQAESMKNQNNIFKAREGKYQTKLNAVETLAVGTTEENELVTGWVQKLKFSLQLEQTKFEEKKKLEEQDFSQLKKDKVRSDIEIAALKQDLQMAKRSHEEHVLQLELQASESKAEYEKRIQELKFHLADARKQVKELEAFSESRYLNWKNKEHTYQSFLNQQFGAFKELKAVMKSVKDEVIKTKRSYSEEYKYFGIKLKGLAEAADNYHVLLTENRKLYNEVQDLKGNIRVYCRIRPFLSGQSQKHTTVEFIGENGELIINNPLKQGKESRKPFKFNKVFGPAARQEEVFLDTRPLIRSVLDGFNVCIFAYGQTGSGKTYTMSGPNLSSKSDWGVNYRALHDLFHISQSRENSIVYEIGVQMVEIYNEQFHFLDLHTLGIWNTTQPNGLAVPDASMHSVKSMKDVLELMNTGLTNRATSATALNERSSRSHSVLSIHVRGTEVKTNTLLRGCLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVINALSQKSQHVPYRNSKLTQLLQSSLGGQAKTLMFVQLNPDVASYSETISTLKFAERVSGVELGAARSNKEGRDVRELMEQMTSLKEVMARKDEEIERLQLLKSNHNGAKLGMISPRHLPSSPRRHSVGTPHNSTRLSGTRSLGVNEKTASDMDNGSEYSDKHSEAGSHQSMDDFRNKPSSLRLKLAREDADQNFNEDIELLRFGDADSEERLSDISDGGLSMGTETDGSISSIVEYTLFPDLDMAAETPPAKDMTSNKLPSQSAEKSNMPSRIPKAPQVQPKLPTKTSRLSLNKSTSKVSSSIKKPTVGSSSAASARSSKRWQ 1069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03528 1069 MobiDBLite consensus disorder prediction 871 898 - -
Vifa6g03528 1069 ProSiteProfiles Calponin homology (CH) domain profile. 16 118 IPR001715 GO:0005515
Vifa6g03528 1069 ProSiteProfiles Kinesin motor domain profile. 483 806 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g03528 1069 SMART ch_5 18 113 IPR001715 GO:0005515
Vifa6g03528 1069 MobiDBLite consensus disorder prediction 1000 1015 - -
Vifa6g03528 1069 PANTHER KINESIN-LIKE PROTEIN KLP-3 25 1031 IPR027640 GO:0003777|GO:0007018
Vifa6g03528 1069 MobiDBLite consensus disorder prediction 899 921 - -
Vifa6g03528 1069 Coils Coil 343 363 - -
Vifa6g03528 1069 Pfam Kinesin motor domain 489 804 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g03528 1069 MobiDBLite consensus disorder prediction 852 921 - -
Vifa6g03528 1069 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 483 844 IPR027417 -
Vifa6g03528 1069 SUPERFAMILY Calponin-homology domain, CH-domain 21 117 IPR036872 -
Vifa6g03528 1069 MobiDBLite consensus disorder prediction 992 1069 - -
Vifa6g03528 1069 MobiDBLite consensus disorder prediction 1027 1069 - -
Vifa6g03528 1069 Coils Coil 820 850 - -
Vifa6g03528 1069 Coils Coil 368 395 - -
Vifa6g03528 1069 FunFam p-loop containing nucleoside triphosphate hydrolases superfamily protein 425 808 - -
Vifa6g03528 1069 Gene3D - 18 118 IPR036872 -
Vifa6g03528 1069 PRINTS Kinesin heavy chain signature 756 777 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g03528 1069 PRINTS Kinesin heavy chain signature 558 579 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g03528 1069 PRINTS Kinesin heavy chain signature 707 725 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g03528 1069 PRINTS Kinesin heavy chain signature 676 693 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g03528 1069 Pfam Calponin homology (CH) domain 22 117 IPR001715 GO:0005515
Vifa6g03528 1069 Gene3D Kinesin motor domain 424 808 IPR036961 -
Vifa6g03528 1069 SMART kinesin_4 481 814 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03528 Vifa-Chr6 1160579964 1160591595 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03528 451 806 Calmodulin-binding Proteins AT5G65930 41.033 4.79e-71 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03528 K10406 - gmx:100812813 1643.25