Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03527 ATGCAGTGGGAACCGGAGGGAGGTGGAAAAGTTGCCGGACTTGCGGGTGGCCGGCTTGTGTCTTTCATTAAGTGGATAAATGCCGAGCTTCCTGACTTTAATCTGCCTTTAGAAACTTCGGAAGAGGAATTGAGGCTATGCTTGAGTGATGGATTGGTATTGTGTAGCATTTTGGACAAGCTGGTTCCTGGTTCACTCCAGGTAGGAAGTGGTTCTTTGAATGAGGTGACGGATGTTGAAAGGTTTTTGGTAGCCTTGGATGAATTGGGATTGCCAGGATTTGAATTGTCAGACTTGGAGCAGGGATTGATGGTGCCCGTGTTGCAGTGCCTTGAGAATCTGAAAGCTCACTTTGTATATAATGCTGCACGTGAAAATGTCCAAAGTTATTCTAGAAAGAGATGGGACCAGCCAGACCTAACATCCCTAGCTGAAACTGATAGTTGCCTCAAGGATGCTTCAAATTTCCAACATGCTATTGATGACTCTGTTGTATCAGATGGAATTGCTTCCATTGATCATATTGGATTCAAGTCTAATGAACTGTTGCAGTTGAAACAAGGACTACACGTGGATCTTTCAGATGCCAAACTTAATGAACTATTGAAATCAAACAATTTGGACAGTATCTCATCTCGATTTCTTTTTAACATACTAAATAGGATCCTAAGTGATATCTTTGAAAGGAAGAATGGAGATATACCTCAAGCTCAGCGTGCAGCATGCCTGTTGAGAAAGATTCTGCAAGTAATTGAGTTACGCTTTTCAAATCAAGCAGAAAGCATGAAAAATCAAAACAATATTTTCAAGGCTCGTGAGGGAAAGTATCAAACAAAACTAAACGCGGTTGAAACCTTGGCGGTAGGGACAACTGAAGAGAATGAGCTTGTGACAGGTTGGGTTCAGAAGTTGAAGTTTTCTTTGCAGCTTGAACAAACTAAATTTGAGGAAAAGAAGAAACTCGAAGAGCAGGATTTTTCCCAATTAAAGAAAGACAAAGTTCGCAGTGATATTGAAATTGCTGCATTGAAACAAGATTTGCAAATGGCAAAAAGATCACATGAAGAACATGTTTTGCAGTTAGAATTGCAAGCTTCTGAATCTAAAGCTGAATATGAGAAAAGGATACAAGAACTTAAATTTCATCTTGCTGATGCGAGAAAGCAAGTGAAGGAACTGGAGGCATTTTCGGAATCCAGATATTTGAATTGGAAGAATAAAGAGCATACCTATCAAAGTTTCTTAAATCAACAATTTGGAGCTTTTAAGGAACTGAAAGCTGTCATGAAATCTGTCAAAGATGAAGTGATAAAAACAAAAAGAAGCTACTCGGAGGAATACAAGTACTTTGGAATCAAGCTCAAAGGTCTAGCCGAGGCTGCTGATAATTATCACGTTCTTCTAACAGAAAATAGGAAATTATATAACGAAGTTCAAGATTTGAAAGGAAATATCAGGGTATATTGTCGAATTAGACCATTTCTTTCTGGGCAAAGTCAGAAACATACAACAGTCGAGTTTATTGGTGAAAACGGAGAACTAATTATTAACAATCCTCTTAAACAAGGAAAAGAAAGCCGCAAGCCTTTTAAATTTAATAAAGTTTTTGGTCCAGCAGCGCGTCAAGAGGAAGTATTCTTGGACACTCGACCGCTAATTCGTTCTGTTCTTGATGGGTTCAATGTTTGTATATTCGCTTACGGTCAAACTGGCTCAGGAAAGACTTATACCATGAGTGGACCTAACCTATCATCAAAATCAGATTGGGGAGTCAACTATAGAGCACTTCATGATCTTTTCCATATCTCCCAGAGTAGGGAAAATTCAATTGTTTACGAAATTGGAGTTCAAATGGTTGAGATTTATAATGAACAATTTCATTTCCTTGACTTGCACACACTTGGGATTTGGAATACTACCCAACCAAATGGGTTGGCTGTTCCTGATGCGAGTATGCATTCTGTGAAGTCTATGAAAGATGTCCTTGAGTTGATGAACACCGGGTTGACGAATCGGGCTACTAGTGCTACAGCCCTAAACGAAAGAAGTAGTAGATCACACAGTGTTCTCTCTATTCATGTTCGAGGAACGGAAGTGAAGACCAACACTCTGTTGCGTGGATGTCTGCATCTTGTAGATCTTGCGGGAAGTGAAAGAGTGGATCGTTCTGAAGCAACTGGAGATAGGCTTAAGGAGGCTCAGCATATAAACAAATCACTATCTGCACTTGGAGATGTAATAAATGCTCTGTCTCAAAAGAGCCAACATGTGCCATATAGAAATAGCAAATTGACTCAACTCCTTCAGAGTTCGTTAGGCGGTCAAGCAAAAACCCTTATGTTTGTACAGCTTAATCCGGATGTTGCTTCATACTCTGAAACTATAAGCACTTTGAAGTTTGCTGAAAGAGTTTCTGGTGTTGAGTTAGGCGCGGCTCGAAGCAACAAAGAGGGAAGGGATGTGAGAGAACTAATGGAACAGATGACATCTCTCAAGGAAGTTATGGCAAGGAAGGATGAAGAGATTGAGCGGTTGCAGTTGCTCAAGTCTAATCATAATGGTGCAAAACTTGGAATGATCTCACCAAGACACCTGCCATCATCCCCAAGGAGACATTCCGTAGGGACTCCCCACAACAGCACAAGACTTTCCGGCACAAGGAGCCTGGGGGTCAATGAAAAAACAGCTTCTGACATGGATAACGGCTCAGAGTACAGTGATAAGCATTCGGAAGCTGGTTCTCATCAATCAATGGATGATTTCAGGAACAAGCCCAGTTCCCTTCGGTTGAAATTAGCTCGAGAAGACGCTGATCAAAATTTCAACGAGGACATTGAACTCTTAAGATTCGGAGATGCTGATTCGGAGGAGAGATTAAGTGACATATCTGACGGTGGTCTTTCAATGGGAACAGAAACTGATGGTTCAATCAGCAGTATTGTGGAGTACACTCTTTTCCCTGACCTTGACATGGCAGCTGAAACTCCACCAGCTAAGGATATGACATCCAACAAACTTCCATCTCAGAGTGCGGAAAAGTCCAATATGCCATCAAGAATTCCCAAAGCTCCGCAAGTCCAACCAAAACTGCCGACAAAAACTTCTAGGCTATCGTTAAACAAAAGCACTTCAAAGGTTTCATCAAGTATTAAAAAACCGACAGTCGGTAGCTCTTCTGCAGCTTCGGCAAGATCCTCTAAACGATGGCAATAG 3213 0.4105 MQWEPEGGGKVAGLAGGRLVSFIKWINAELPDFNLPLETSEEELRLCLSDGLVLCSILDKLVPGSLQVGSGSLNEVTDVERFLVALDELGLPGFELSDLEQGLMVPVLQCLENLKAHFVYNAARENVQSYSRKRWDQPDLTSLAETDSCLKDASNFQHAIDDSVVSDGIASIDHIGFKSNELLQLKQGLHVDLSDAKLNELLKSNNLDSISSRFLFNILNRILSDIFERKNGDIPQAQRAACLLRKILQVIELRFSNQAESMKNQNNIFKAREGKYQTKLNAVETLAVGTTEENELVTGWVQKLKFSLQLEQTKFEEKKKLEEQDFSQLKKDKVRSDIEIAALKQDLQMAKRSHEEHVLQLELQASESKAEYEKRIQELKFHLADARKQVKELEAFSESRYLNWKNKEHTYQSFLNQQFGAFKELKAVMKSVKDEVIKTKRSYSEEYKYFGIKLKGLAEAADNYHVLLTENRKLYNEVQDLKGNIRVYCRIRPFLSGQSQKHTTVEFIGENGELIINNPLKQGKESRKPFKFNKVFGPAARQEEVFLDTRPLIRSVLDGFNVCIFAYGQTGSGKTYTMSGPNLSSKSDWGVNYRALHDLFHISQSRENSIVYEIGVQMVEIYNEQFHFLDLHTLGIWNTTQPNGLAVPDASMHSVKSMKDVLELMNTGLTNRATSATALNERSSRSHSVLSIHVRGTEVKTNTLLRGCLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVINALSQKSQHVPYRNSKLTQLLQSSLGGQAKTLMFVQLNPDVASYSETISTLKFAERVSGVELGAARSNKEGRDVRELMEQMTSLKEVMARKDEEIERLQLLKSNHNGAKLGMISPRHLPSSPRRHSVGTPHNSTRLSGTRSLGVNEKTASDMDNGSEYSDKHSEAGSHQSMDDFRNKPSSLRLKLAREDADQNFNEDIELLRFGDADSEERLSDISDGGLSMGTETDGSISSIVEYTLFPDLDMAAETPPAKDMTSNKLPSQSAEKSNMPSRIPKAPQVQPKLPTKTSRLSLNKSTSKVSSSIKKPTVGSSSAASARSSKRWQ 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03527 1070 MobiDBLite consensus disorder prediction 993 1070 - -
Vifa6g03527 1070 ProSiteProfiles Calponin homology (CH) domain profile. 16 119 IPR001715 GO:0005515
Vifa6g03527 1070 MobiDBLite consensus disorder prediction 1028 1070 - -
Vifa6g03527 1070 FunFam p-loop containing nucleoside triphosphate hydrolases superfamily protein 426 809 - -
Vifa6g03527 1070 Coils Coil 821 851 - -
Vifa6g03527 1070 Coils Coil 369 396 - -
Vifa6g03527 1070 ProSiteProfiles Kinesin motor domain profile. 484 807 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g03527 1070 SMART kinesin_4 482 815 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g03527 1070 Pfam Calponin homology (CH) domain 22 118 IPR001715 GO:0005515
Vifa6g03527 1070 PANTHER KINESIN-LIKE PROTEIN KLP-3 305 1032 IPR027640 GO:0003777|GO:0007018
Vifa6g03527 1070 PRINTS Kinesin heavy chain signature 708 726 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g03527 1070 PRINTS Kinesin heavy chain signature 677 694 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g03527 1070 PRINTS Kinesin heavy chain signature 757 778 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g03527 1070 PRINTS Kinesin heavy chain signature 559 580 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g03527 1070 Pfam Kinesin motor domain 490 805 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa6g03527 1070 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 484 845 IPR027417 -
Vifa6g03527 1070 MobiDBLite consensus disorder prediction 872 899 - -
Vifa6g03527 1070 Gene3D - 18 119 IPR036872 -
Vifa6g03527 1070 SMART ch_5 18 114 IPR001715 GO:0005515
Vifa6g03527 1070 MobiDBLite consensus disorder prediction 1001 1016 - -
Vifa6g03527 1070 MobiDBLite consensus disorder prediction 900 922 - -
Vifa6g03527 1070 SUPERFAMILY Calponin-homology domain, CH-domain 21 118 IPR036872 -
Vifa6g03527 1070 Coils Coil 344 364 - -
Vifa6g03527 1070 Gene3D Kinesin motor domain 425 809 IPR036961 -
Vifa6g03527 1070 MobiDBLite consensus disorder prediction 853 922 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03527 Vifa-Chr6 1160579964 1160591595 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03527 452 807 Calmodulin-binding Proteins AT5G65930 41.033 4.97e-71 257