Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03526 ATGTCTGGATGCAATCAACATTCCGGCAAGTATTGGTCGATTCAAGATGGAGTGATATCCTCTAACGCTCAAATTTCTCGTTTAGATTCTCCGCCGTCTCTTTCCAATACGGAGATTAACAAATCCTGTAGAAATTCACTGACAACACCTCAGCTTATTTCTGCAATTCGCCACTTATGGGGTTCTGCTTTTCGGCCGAAGGAAAATGTGTATCGAGATGATGATGACAAAGGATTCTCGAAGAGAAATGGTTTGCTTATTTCTAATACAACTGATTATTATTGCGTTAATCCAGGTGCTACTACTTGCTTCGGTTCACTTATTCTGCAGGAGAAATTGGATTTCCCTAAGGTAACACACAAGATCTTGATACTTAAATCTTCTTATGGAAATCGAGACTATGTTCATTCTTTATTCCAGAGAGTTTTGCAAACACATGATAAAAATTTGAATGAATATTGTGTTACTGAACCGGAGAACCTGGAAACTAATTCTTTGGTTGCCAGGGACTGTGTTACTATTGACACGGGTACCGCTTCATTGGCTAATCAAAACGATGTACGCAATCCTGATGTACTAATACCTGAAGCTTCATCATTATCTAATGATGCAGTTAACTCACTGTGTTCAGACTATTTTCTTCAAACTGTGCCGGATAATCAGATGGAAGTTGGTGTTTGTCAGACCCTATCTTCTAGTATCTATGCAGATTATCGTATTAACAGCTCTTTAGCTACCTCTAACACTGCTTCTGTGCAATGCCGGTATAAGATTGATGATAATCAATTAAAGGGAATACGAACAAGACATTTATCAGATGTAAGTGATAATGAACGTAAGGTTCAGATCTTCTCTGCGAATCAGAAGCAGGCTTCCCATTCCTTAGCCAAGCAAGAACATGCTTTTTCTGGGGCCATGGCTGGAGTATGTGTCAGCTGTTGTCTGCATCCTGTTGACACAATCAAGACAGTCCTTCAATCATGCTCTGCAGAACAGAGGTCCATCTTTTACATTGCCAAATCAATTGTTTCTGATAGAGGTTTTCCTGGACTATATCGGGGAATTACTACAAATATTGCATGTTCAGCTCCAATTTCTGCAGTTTATACTTTCACTTATGAATCAGTTAAAGCAGCTTTGCTTCCTTATCTGCCAAAGGAGTATTATTCTTCTGCCCATTGTGTGGGAGGTGGTTGCGCAAGCATTGCTACATCTTTCATCTTTACTCCTAGTGAGCGAATAAAGCAACAGATGCAAATTGGGTCTCATTATCGCAACTGCTGGGATGCATTGATTGGAATTATCAAAAATGGTGGTCTTTCCTCGCTATATGCGGGTTGGAAAGCTGTATTGTGCCGAAATATCCCACATTCAATGATCAAGGTTAGTAGCTGTTTTCAATATTTAATGCATGTTCCTATTGAAGTAACTTTACACCAGTCGGATTTCTGTCACAAAAGTACGAGGGGGAGGATGGCATGA 1482 0.3981 MSGCNQHSGKYWSIQDGVISSNAQISRLDSPPSLSNTEINKSCRNSLTTPQLISAIRHLWGSAFRPKENVYRDDDDKGFSKRNGLLISNTTDYYCVNPGATTCFGSLILQEKLDFPKVTHKILILKSSYGNRDYVHSLFQRVLQTHDKNLNEYCVTEPENLETNSLVARDCVTIDTGTASLANQNDVRNPDVLIPEASSLSNDAVNSLCSDYFLQTVPDNQMEVGVCQTLSSSIYADYRINSSLATSNTASVQCRYKIDDNQLKGIRTRHLSDVSDNERKVQIFSANQKQASHSLAKQEHAFSGAMAGVCVSCCLHPVDTIKTVLQSCSAEQRSIFYIAKSIVSDRGFPGLYRGITTNIACSAPISAVYTFTYESVKAALLPYLPKEYYSSAHCVGGGCASIATSFIFTPSERIKQQMQIGSHYRNCWDALIGIIKNGGLSSLYAGWKAVLCRNIPHSMIKVSSCFQYLMHVPIEVTLHQSDFCHKSTRGRMA 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03526 493 FunFam Mitochondrial substrate carrier protein-like 274 421 - -
Vifa6g03526 493 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 275 463 - -
Vifa6g03526 493 Pfam Mitochondrial carrier protein 299 380 IPR018108 -
Vifa6g03526 493 Pfam Mitochondrial carrier protein 391 463 IPR018108 -
Vifa6g03526 493 ProSiteProfiles Solute carrier (Solcar) repeat profile. 295 379 IPR018108 -
Vifa6g03526 493 ProSiteProfiles Solute carrier (Solcar) repeat profile. 388 471 IPR018108 -
Vifa6g03526 493 SUPERFAMILY Mitochondrial carrier 299 464 IPR023395 -
Vifa6g03526 493 Gene3D Mitochondrial carrier domain 268 475 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03526 Vifa-Chr6 1160103010 1160105060 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03526 300 469 Chloroplast and Mitochondria Gene Families AT2G30160 25.510 1.00e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03526 - - lja:Lj4g3v2962350.1 533.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03526 6 1160103010 1160105060 Vifa6g03526 6 1160103010 1160105060 ECH