Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03519 ATGGGTTGTAAGTTCTCGAAGTATTCAACATGTTGTTGGGGTAGTGAGCAAGGAGGTGGTGGTGTTCAAGTTCCGGAGGCAAATATTGATGAAAATGAAAACAATAATGTTGAAGGCAATGGTCCGCCGTCGTTTCGTGAATATACGGTTGATCAACTTAGGAAGGCCACCTCTGGGTTTGCGGTAGATAATATTGTTTCCGAGCATGGAGAAAAGGCTCCAAATGTTGTTTTTAAAGGGAAACTTGAAAATCAAACGCGAATTACCATCAAACGGTTCAATAAATCAGCCTGGCCAGACGCCCATCAATTTTTGGAAGAGGCCAAAGCTGTTGGTCAGCTAAGGAGCCCAAAATTGGCAAATCTGCTTGGATGTTGCTCTGAAGGTGATGAGAGGTTGCTTGTATCAGAGTATATGTCCAATGATACGTTGGCAAAACACTTGTTCCATTGGGAAACTCAGCCTATGAAATGGGCAATGCGACTTAGAGTTGCTTTACATCTTGCCCAAGCTCTAGAGTACTGTACCAACAAAGGACGGGCTTTGTATCATGATCTAAATGCTTACCGAGTTCTTTTCGATGATGACTTCAATCCTAAACTTTCATGCTTCGGTCTGATGAAAAACAGTCGAGATGGGAAAAGTTATAGTACAAATTTGGCATTTACACCACCCGAGTATCTCAGGACAGGTAGAGTGACCCCAGAGAGTGTAACTTATAGCTTTGGGACCCTTTTGCTTGACCTTCTCAGTGGAAAACATATTCCTCCAAGCCATGCCCTTGACCTGATCAGAGACAGGAACCTTGAGAGTCTAACAGACTCATGTTTAGAAGGACAATTTTCAGATGACGAGGGGACTGAATTAGTTCGTCTAGCCTCACGATGTTTACAATCTGAACCGCGAGAGCGTCCTAATCCAAAGTCACTGGTCACTGCTCTAATACCTTTACAGAAGGATTCTGAGGTTCCTTCTCATGTGCTGATGGGTATACCTGATGCCGATGGTAGTGCAGCTTTTCCCCTTACTCCACTTGGGGAAGCTTGTCTACGCAGGGATCTGACATCCCTACACGAGGTGCTGGAGAAAATTGGGTATAAAGATGATGAGGGCGCAGCTACCGAGCTTTCGTTCCAAATGTGGACCAACCAAATGCAGCAAACATTGGACTCAAAGAAGAAAGGAGATACCGCTTTTCGACAGAAGGACTTCAAAAATGCAATCGATGGCTACACCCAGTTTATTGAGGTTGGAAGCATGACTTCTCCAACAATTTTCGCTCGACGTAGTCTGTCTTATCTCTTCAGCAATATGCCAAATGAAGCACTTGGTGATGCAATGCAGAATGATGCCCAAGTGGCCCTTAAAGAAGGTTCTTCACTTGAAACTAATAAGAGCACAAATTAA 1407 0.4392 MGCKFSKYSTCCWGSEQGGGGVQVPEANIDENENNNVEGNGPPSFREYTVDQLRKATSGFAVDNIVSEHGEKAPNVVFKGKLENQTRITIKRFNKSAWPDAHQFLEEAKAVGQLRSPKLANLLGCCSEGDERLLVSEYMSNDTLAKHLFHWETQPMKWAMRLRVALHLAQALEYCTNKGRALYHDLNAYRVLFDDDFNPKLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVTYSFGTLLLDLLSGKHIPPSHALDLIRDRNLESLTDSCLEGQFSDDEGTELVRLASRCLQSEPRERPNPKSLVTALIPLQKDSEVPSHVLMGIPDADGSAAFPLTPLGEACLRRDLTSLHEVLEKIGYKDDEGAATELSFQMWTNQMQQTLDSKKKGDTAFRQKDFKNAIDGYTQFIEVGSMTSPTIFARRSLSYLFSNMPNEALGDAMQNDAQVALKEGSSLETNKSTN 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03519 468 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 27 453 IPR045845 GO:0004672|GO:0009742
Vifa6g03519 468 SUPERFAMILY Protein kinase-like (PK-like) 34 323 IPR011009 -
Vifa6g03519 468 Gene3D Phosphorylase Kinase; domain 1 34 138 - -
Vifa6g03519 468 FunFam probable serine/threonine-protein kinase At5g41260 140 331 - -
Vifa6g03519 468 Pfam Protein tyrosine and serine/threonine kinase 77 313 IPR001245 GO:0004672|GO:0006468
Vifa6g03519 468 Gene3D Tetratricopeptide repeat domain 375 458 IPR011990 GO:0005515
Vifa6g03519 468 Gene3D Transferase(Phosphotransferase) domain 1 140 331 - -
Vifa6g03519 468 FunFam probable serine/threonine-protein kinase At4g35230 35 138 - -
Vifa6g03519 468 ProSiteProfiles Protein kinase domain profile. 63 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g03519 468 SUPERFAMILY TPR-like 390 448 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03519 Vifa-Chr6 1158343513 1158350329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03519 48 320 Receptor kinase-like Gene Family AT3G58690 32.550 6.15e-42 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Vifa6g03519 PK_Tyr_Ser-Thr 7.6e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03519 K14500 - gmx:100797107 754.207
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03519 6 1158343513 1158350329 Vifa6g03519 6 1158343513 1158350329 ECH