Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03518 ATGGATGGTAGAGAGGCTATGGCATTCTCTGGTGGTCCTGGTTCTTATTACATGCATAGAGGAGGAGTTGAGGCTGCAGGGTCTGGCTCTGGAGGATTCCAAGTACCTCCTGGATTCAGAGCTTTGCCAAACAATGGTATTGTAGGTCAGCCAAATGTCAGGGCTCAGGGTGGTAATGGTGATACTAGTTCCATGTTTCCGTCCGAGCCTCAGTCTCATGCTGATTTTAATCATGATGTTAGCGTTGGTGCATCTTCCGGTGCACCTTCTAGTGAGCCTGTGAAAAAGAAAAGAGGGAGGCCGCGGAAATACGGACCCGATGGATGTGTTTCTTTGAAACTGACTCCGATGTCTGCCCCTGCTAATTCCACTCAAGATTCGGCTACTCCTTCCGAGAAACGGGGGAGAGGACGTCCTCGTGGATCTGGAAGGAAGCAGCAGCTAGCTGCATTAGGTGACTGGATGACCAGTTCAGCAGGGTTGGCTTTTTCGCCTCATGTTATCACCATTGCAGCTGGGGAGGATATCGCAGCAAAACTATTGTTGTTATCACAGCAGAGACCAAGGGCTCTGTGTATCTTGTCGGGCACAGGGATAGCTTCTAAAGTTACTCTGCGACAGCCTGCTTCTACCGATGCCGGTGTAACTTATGAGGGAAGATTCCAAATATTAAGCTTATCCGGTTCTTACTTGGTTGCTGAAGATGGTGGACCAACCAACAGAACGGGTGGCATAAGTGTTTCTCTTTCTAGCCGCGATGGTCATGTTATTGGTGGCAGTGTTGCTTTGCTTATTGCTGGAAGCCCAGTGCAGTTGGTTGTGTGCAGTTTTGTATATGGCGGTGGCTCGAAAGTAAAGACTAAACAAGGGACCATTACCAACGGGGAAAGTTCTGAGCCTCATAATGATAACCTAGGTTCTCCAGCCAGTGCTGCACCTGGTCAAAACTACATCTCTTCACCAACAGGCGTGTGGCAGGGATCACAACCATCGGAACTGAAAAGCGTGCCCGCACATACTGGCATTGACTTGACGCGAGGCTGA 1044 0.4952 MDGREAMAFSGGPGSYYMHRGGVEAAGSGSGGFQVPPGFRALPNNGIVGQPNVRAQGGNGDTSSMFPSEPQSHADFNHDVSVGASSGAPSSEPVKKKRGRPRKYGPDGCVSLKLTPMSAPANSTQDSATPSEKRGRGRPRGSGRKQQLAALGDWMTSSAGLAFSPHVITIAAGEDIAAKLLLLSQQRPRALCILSGTGIASKVTLRQPASTDAGVTYEGRFQILSLSGSYLVAEDGGPTNRTGGISVSLSSRDGHVIGGSVALLIAGSPVQLVVCSFVYGGGSKVKTKQGTITNGESSEPHNDNLGSPASAAPGQNYISSPTGVWQGSQPSELKSVPAHTGIDLTRG 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03518 347 MobiDBLite consensus disorder prediction 116 130 - -
Vifa6g03518 347 MobiDBLite consensus disorder prediction 288 335 - -
Vifa6g03518 347 Gene3D - 165 293 - -
Vifa6g03518 347 SUPERFAMILY AF0104/ALDC/Ptd012-like 163 280 - -
Vifa6g03518 347 ProSiteProfiles PPC domain profile profile. 157 299 IPR005175 -
Vifa6g03518 347 Pfam Plants and Prokaryotes Conserved (PCC) domain 165 278 IPR005175 -
Vifa6g03518 347 MobiDBLite consensus disorder prediction 49 88 - -
Vifa6g03518 347 MobiDBLite consensus disorder prediction 1 146 - -
Vifa6g03518 347 CDD DUF296 165 277 IPR005175 -
Vifa6g03518 347 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 65 315 IPR039605 GO:0003680
Vifa6g03518 347 MobiDBLite consensus disorder prediction 288 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03518 Vifa-Chr6 1157326386 1157328242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03518 1 347 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 46.253 1.78e-86 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03518 - - gmx:100813888 447.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03518 6 1157326386 1157328242 Vifa6g03518 6 1157326386 1157328242 ECH
Vifa1g07917 1 1235817962 1235820545 Vifa6g03518 6 1157326386 1157328242 PCT