Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03505 ATGCGAATGCAGATAATCATTTATCTCCAAAACAAAACCGCAAGTCAAAGCACAAAACAACGTTTGAGAAGGAAACACAGCAGCTTCTGCATCTTCCACCATTTCAGAATGGTCAAGGGTAGACAGGGAGAACGCATTAGGCTTCATGTCAGGGGTACAGTTCTTGGATACAAAAGGTCAAAGTCAAATCAATACCCAAACACTTCTTTTGTTCAGATCGAGGGAGTAAACACAAAGGAAGAGGTTGCATGGTATGCTGGGAAACGGTTGGCATACATTTACAAGGCCAAGGTTAAAAGGGATGGTAGCCACTATAGGTGTATCTGGGGAAAGGTTACTAGACCTCATGGTAACAGTGGGATAGTCCGTGCAAAGTTCACTTCAAATTTGCCACCAAAATCAATGGGAGCTAGGGTTAGAGTATTCATGTATCCAAACAATATATAA 447 0.4183 MRMQIIIYLQNKTASQSTKQRLRRKHSSFCIFHHFRMVKGRQGERIRLHVRGTVLGYKRSKSNQYPNTSFVQIEGVNTKEEVAWYAGKRLAYIYKAKVKRDGSHYRCIWGKVTRPHGNSGIVRAKFTSNLPPKSMGARVRVFMYPNNI 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03505 148 Pfam Ribosomal protein L35Ae 48 142 IPR001780 GO:0003735|GO:0005840|GO:0006412
Vifa6g03505 148 FunFam 60S ribosomal protein L35a 43 148 - -
Vifa6g03505 148 ProSitePatterns Ribosomal protein L35Ae signature. 110 131 IPR018266 GO:0003735|GO:0005840|GO:0006412
Vifa6g03505 148 PANTHER 60S RIBOSOMAL PROTEIN L35A 38 148 IPR001780 GO:0003735|GO:0005840|GO:0006412
Vifa6g03505 148 Hamap 50S ribosomal protein L35Ae [rpl35ae]. 50 142 IPR001780 GO:0003735|GO:0005840|GO:0006412
Vifa6g03505 148 Gene3D translation elongation factor selb, chain A, domain 4 42 148 IPR038661 -
Vifa6g03505 148 SUPERFAMILY Translation proteins 48 142 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03505 Vifa-Chr6 1155191361 1155191807 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03505 37 148 Cytoplasmic Ribosomal Protein Gene Family AT1G74270 87.500 1.71e-73 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03505 K02917 - pop:7494468 223.787