Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa6g03485 | ATGTCTTTCAGCGGAACCCAACAGAAATGCAAAACTTGCGATAAAACTGTTCATTTGGTTGATACATTATCGGCTGATGGTAATGTTTATCACAAAAACTGCTTCAGATGTGTCCAATGCAATGGCCTTCTTGCGATGAGCAACTATACATCAAATGAAGGAGTTTTGTATTGCAAGACTCATGCTGAGCAGCTTTTCAAGGATTCTGCACTCAAGAAATCCCCGTCAGGAAAGCCCAGCGAACTGCCTAGGGCCCCAAGCAAACTTTCTGCTTTCTTCTCGGGGACTCAAGAAAAATGTTCGTCATGCAAGAAAACTGTATATCCATTGGAAAAGTTGACAGTGGAAGGTGAATTTTACCACAAATCATGCTTTAGGTGTACACATGCAGGATGTTTTCTGAGCCCTTCATCCTATGCTGCTCTTGATGGATACATATACTGCAAGCCACACTTTTCTCAGTTGTTTAAGGCTAAAGGTAGCTATAGTTATCTCTCCAAACAAGCTTCGCTGAAGAAAAATGACGAAGCGCTGCAACAGGCTGCAGAAGCGAAAACAGATGATAATTCAGGAGCAACATCAGACGCGGAGACAAAGGAAGAGGAACAAGATCCTGCTGCTGTCACAGAAGAGGCGTAG | 639 | 0.4319 | MSFSGTQQKCKTCDKTVHLVDTLSADGNVYHKNCFRCVQCNGLLAMSNYTSNEGVLYCKTHAEQLFKDSALKKSPSGKPSELPRAPSKLSAFFSGTQEKCSSCKKTVYPLEKLTVEGEFYHKSCFRCTHAGCFLSPSSYAALDGYIYCKPHFSQLFKAKGSYSYLSKQASLKKNDEALQQAAEAKTDDNSGATSDAETKEEEQDPAAVTEEA | 212 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa6g03485 | 212 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 36 | 69 | - | - | |
| Vifa6g03485 | 212 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 92 | 125 | - | - | |
| Vifa6g03485 | 212 | Pfam | LIM domain | 10 | 64 | IPR001781 | - | |
| Vifa6g03485 | 212 | Pfam | LIM domain | 100 | 155 | IPR001781 | - | |
| Vifa6g03485 | 212 | ProSiteProfiles | LIM domain profile. | 98 | 158 | IPR001781 | - | |
| Vifa6g03485 | 212 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 3 | 35 | - | - | |
| Vifa6g03485 | 212 | ProSiteProfiles | LIM domain profile. | 8 | 68 | IPR001781 | - | |
| Vifa6g03485 | 212 | ProSitePatterns | LIM zinc-binding domain signature. | 10 | 44 | IPR001781 | - | |
| Vifa6g03485 | 212 | MobiDBLite | consensus disorder prediction | 176 | 212 | - | - | |
| Vifa6g03485 | 212 | FunFam | LIM domain and actin-binding 1 | 4 | 73 | - | - | |
| Vifa6g03485 | 212 | Gene3D | Cysteine Rich Protein | 4 | 71 | - | - | |
| Vifa6g03485 | 212 | Gene3D | Cysteine Rich Protein | 94 | 164 | - | - | |
| Vifa6g03485 | 212 | MobiDBLite | consensus disorder prediction | 190 | 205 | - | - | |
| Vifa6g03485 | 212 | SMART | lim_4 | 9 | 61 | IPR001781 | - | |
| Vifa6g03485 | 212 | SMART | lim_4 | 99 | 151 | IPR001781 | - | |
| Vifa6g03485 | 212 | FunFam | LIM domain and actin-binding 1 | 94 | 164 | - | - | |
| Vifa6g03485 | 212 | PANTHER | OS06G0237300 PROTEIN | 95 | 204 | - | - | |
| Vifa6g03485 | 212 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 126 | 164 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vifa6g03485 | Vifa-Chr6 | 1147800035 | 1147801150 | Dispersed/Transposed |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | LIM | Vifa6g03485 | LIM | 5.1e-11 | CL0167 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa6g03485 | - | K24413 | tpra:123915974 | 351.288 |