Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03478 ATGTGGGGATGGATGATTAGGCAAGGCCGGACGGCACCATCATCACCCGCATCATGGAACCTGAACCTCATCCGTAACATGGGCGGCGGTCCTCGCACCTTCCCCGGCGGCGTAAGCAAATGGAAATGGAAACGCATGCACGAAAAACGAGCCAAAGAGAAACAGAAAAACCTCCTCGAACAAGAGAAACAACTCTACCAAGCTCGCATTCGATCTCACATTCGCTCCACTCTCTCGCCTCCACCTTCATCCTCTTCTTCCGCCACTCACAACCCCATCTCCCCTCACCAACACATCAAAGCCCTCGCCGATCGTTTCGTCAAAGACGGCGCCCAAGATCTCTGGAACGACCTCGACGGTCCGATTACCCCAACCCAAGCTCAGACCCAAATTCAACCCCAAACCTCCCAGCAAATTGATTTACGCAATCAGAATTTGACTAACTTTTCTAACTATTCGCAAATTAGGGGTTACCGTTCTGTTTCTGAAGTTAGGTTTTTGGCTGATCGGAAGCGGGTTAGCACCGAAAAGCTTGAAAAACGTAGAATTTGGAGAAAGGGTGATTCTTCTAGCGAGAGTGAGAGTGAGGCTGAAGATGAATCTAGGAATCAGGGTTATTATTCCAATATGGGTAGTATTGCTTCATTGGGTAAATATGATGGGAAGAGGGAGAGGAGAGTTATGCCGAAGGCTTATGATGATAGAACTGATTTTTCTGAGCAGGTTGAGTTGATTAAGTATGAGCTTAATAAGAAGAAGTTGAGTCAAAGTGAAGAGAATCAGGGTCAGGAACAGGAAAATGTTCTTACTCAGACAAGATTTGAAGAGTGTGCTATATCACCATTGACAATCAAAGCACTTTCTTCATCTGGTTACATTCATATGACGCGGGTTCAAGAGACTAGCCTCCCCATTTGTCTTGAGGGTGTGGATGTTATGGTTAAGGCTAAAACTGGCACTGGAAAAACTGCAGCTTTTTTGCTTCCTGCTATTGAAACAGTTCTGAAAGCTATGAGTAGCAATACCTCTCACCGTGCCCCGCCAATATCTGTTCTTATTCTATGCCCTACCAGAGAACTTGCAAGTCAAATTGCTGCTGAAGCAAAGGTTTTGCTGAAATATCACGATGGCATTGGGGTGCAGACTCTAGTTGGAGGTGTGCGATTTAAAGTTGACCAGAAACGCCTTGAATCAGATCCATGCCAGATGCTTGTTGCTACACCTGGTAGATTGCTGGATCATATTGAGAATAAGTCTGGAATATCTGTACGATTGATGGGCTTGCAGATGCTTGTACTTGATGAAGCTGATCATTTATTGGACCTTGGGTTTCGAAAGGATATAGAAAAAATTGTTGATTGTTTGCCCCGTCAAAGGCAATCCTTACTGTTTTCTGCAACCATCCCAAAGGAGGTCCGTCGAATATCTCAGCTTGTTTTGAAAAGGGAACACAAATATGTGGATACAGTTGGAATGGGTTGCGTGGAAACTCCCGTTCAGGTAAAGCAATCATATCTTATTGCTCCACATGAATCACACTTTCAGATAGTACACCATATTTTGAAAGAGCATGTCTCGCAGACACCTGATTATAAGGTTATTGTTTTCTGTATTACTGGGATGGTGACATCACTTACCTATAACCTGCTTCGGGAAATGAAACTGAATGTCAGGGAGATACATTCTCGAAAACCTCAGCTGTATCGGACTCGTGTATCAGAAGAGTTTAAGGAATCTAAACAAATGATTCTTGTCTCCTCTGATGTTTCATCACGTGGAATGAATTATCCTGATGTTACTTTAGTTATTCAGGTGGGAATTCCAACAGACCGTGAACAATATATACATCGTCTTGGAAGAACAGGACGGGAAGGCAAAGGAGGGGAAGGCATATTGTTGATTGCACCATGGGAAGAGTATTTTTTAAGTGAGATCAAGGATCTTCCTCTAGAGAAATTCCCCTTACCAGATTTAGATCCACAAGCACAGCTTAAGATTGAGCAATCAATGGCAAAGATTGATAATGACATCAAAGACGCAGCTTATCATGCTTGGCTCGGTTATTATAACTCCATCAGAGAAATTGGGAGGGAGAAGAGCACAGTAGCTGAGCTGGCAAACCGGTTTTCTGAATCCATTGGTTTACAGAGGCCACCTTCTCTGTTTCGAAAAACTGCACTAAAAATGGGTTTGAAAGATATTCCTGGCATTAGAATTCGTAGATAG 2226 0.4353 MWGWMIRQGRTAPSSPASWNLNLIRNMGGGPRTFPGGVSKWKWKRMHEKRAKEKQKNLLEQEKQLYQARIRSHIRSTLSPPPSSSSSATHNPISPHQHIKALADRFVKDGAQDLWNDLDGPITPTQAQTQIQPQTSQQIDLRNQNLTNFSNYSQIRGYRSVSEVRFLADRKRVSTEKLEKRRIWRKGDSSSESESEAEDESRNQGYYSNMGSIASLGKYDGKRERRVMPKAYDDRTDFSEQVELIKYELNKKKLSQSEENQGQEQENVLTQTRFEECAISPLTIKALSSSGYIHMTRVQETSLPICLEGVDVMVKAKTGTGKTAAFLLPAIETVLKAMSSNTSHRAPPISVLILCPTRELASQIAAEAKVLLKYHDGIGVQTLVGGVRFKVDQKRLESDPCQMLVATPGRLLDHIENKSGISVRLMGLQMLVLDEADHLLDLGFRKDIEKIVDCLPRQRQSLLFSATIPKEVRRISQLVLKREHKYVDTVGMGCVETPVQVKQSYLIAPHESHFQIVHHILKEHVSQTPDYKVIVFCITGMVTSLTYNLLREMKLNVREIHSRKPQLYRTRVSEEFKESKQMILVSSDVSSRGMNYPDVTLVIQVGIPTDREQYIHRLGRTGREGKGGEGILLIAPWEEYFLSEIKDLPLEKFPLPDLDPQAQLKIEQSMAKIDNDIKDAAYHAWLGYYNSIREIGREKSTVAELANRFSESIGLQRPPSLFRKTALKMGLKDIPGIRIRR 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03478 741 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 520 661 IPR001650 -
Vifa6g03478 741 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 303 486 IPR014001 -
Vifa6g03478 741 Gene3D - 237 487 IPR027417 -
Vifa6g03478 741 Pfam DEAD/DEAH box helicase 296 474 IPR011545 GO:0003676|GO:0005524
Vifa6g03478 741 Pfam Helicase conserved C-terminal domain 520 624 IPR001650 -
Vifa6g03478 741 CDD SF2_C_DEAD 501 634 - -
Vifa6g03478 741 Coils Coil 44 69 - -
Vifa6g03478 741 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 272 300 IPR014014 GO:0003724
Vifa6g03478 741 SMART helicmild6 544 625 IPR001650 -
Vifa6g03478 741 SMART ultradead3 291 502 IPR014001 -
Vifa6g03478 741 MobiDBLite consensus disorder prediction 178 210 - -
Vifa6g03478 741 PANTHER RNA HELICASE 225 670 - -
Vifa6g03478 741 MobiDBLite consensus disorder prediction 75 94 - -
Vifa6g03478 741 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 349 643 IPR027417 -
Vifa6g03478 741 Gene3D - 496 721 IPR027417 -
Vifa6g03478 741 MobiDBLite consensus disorder prediction 178 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03478 Vifa-Chr6 1147048599 1147052367 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03478 272 650 Eukaryotic Initiation Factors Gene Family AT3G19760 26.835 1.77e-40 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03478 - - gmx:100808520 1057.36