Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03449 ATGGAGTGGAACAATTTGAAAGCACCTTCATGGGATTTAACTGAAATGGAACAAGGAACCTTAAACCACAACATAGAAACAACAATGGATGGTTCAAGGAGTTTTGGATTTGGAGATTATAGAACAACAAAAGGGGAATTTTCTGTTGACTTGAAACTTGGACAAGTTGGAAATTCTAGTACTCAATTATCAAAATCCAAAGATGTTGTTGCTGGTGGTGGTGCTGATCTTAGTAACTGTAGAGACTATCATAGACGCCATAAGGTTTGTGAGCTTCATTCCAAGACTGCTCAGGTCACTATTGGTGGACATAAACAAAGGTTCTGCCAACAATGTAGCAGGTTCCATTCACTTGAGGAATTTGATGAAGGAAAAAGGACTTTTTGTCCAATTACCAAGGAACTCAGCTGTTACCCTTTCAAGTTCACATATATACCCTTCAACTGCTATGATGACCCTAATTGGGGTTTGAGTTTGCATGATCATAGCTTGGGGTCAGTGGACCATGTTTTGGGTCCAAATGATCAGAGTGGTCATTGTTCATCCATTTATAATATGGGATCTAATGAATCACATTCTCAGGGAAATGATAATGATGCTCCTCCTCCTTTATATCCTTTTCAATGGGATTAA 633 0.387 MEWNNLKAPSWDLTEMEQGTLNHNIETTMDGSRSFGFGDYRTTKGEFSVDLKLGQVGNSSTQLSKSKDVVAGGGADLSNCRDYHRRHKVCELHSKTAQVTIGGHKQRFCQQCSRFHSLEEFDEGKRTFCPITKELSCYPFKFTYIPFNCYDDPNWGLSLHDHSLGSVDHVLGPNDQSGHCSSIYNMGSNESHSQGNDNDAPPPLYPFQWD 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03449 210 MobiDBLite consensus disorder prediction 182 202 - -
Vifa6g03449 210 Pfam SBP domain 70 127 IPR004333 GO:0003677
Vifa6g03449 210 MobiDBLite consensus disorder prediction 182 198 - -
Vifa6g03449 210 ProSiteProfiles Zinc finger SBP-type profile. 65 142 IPR004333 GO:0003677
Vifa6g03449 210 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 74 127 IPR044817 GO:0003677
Vifa6g03449 210 SUPERFAMILY SBT domain 70 127 IPR036893 GO:0003677|GO:0005634
Vifa6g03449 210 Gene3D - 54 129 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03449 Vifa-Chr6 1137719839 1137723296 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03449 1 127 SBP-box Gene Family AT5G50670 44.910 5.04e-30 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vifa6g03449 SBP 1.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03449 - - mtr:25502014 192.586