Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03430 ATGAGACTTAGAGCATCACTACTTCATAGAAGTCTTAATGTAGGTTCTGTTCTCGCAATGACAGCAACTGCTACAACCACAACCTTAGATGCCATCATGTCTGCCCTAGATATTCCTTTTACAAATCTTATTCAAAATGCACACTTAAGGGACAATTTGCGTTTGTCGGCGTCTTTGATAAAAAATAGGCAAGTCAGATGCTTCTATTTTACCGCTTCTGACTGTACTCCCTTTAACTTTCCTTCTCTGATTTTGTTAAACGTATTCATCAATGATAGAATGAAAGACCTACTGGTTCTGATAAAGTCTCCTCCTTTTGCGGGTGTTAAAAGCATCATAGTATACTGCAAATTTCAGTCTGAAACTGATCAAATTAGCAGATACTTGAATGATAACAATATCTCGGCAAAGAGTTATCATAGTGGTATTTTTGCAAAGGAACGTGGCAACGTACAGGAGTTGTTTGCTTCAAACAAGATCAGAGTGGTTGTTGCAACTGTGGCATTTGGTATGGGACTAGATAAAAGAGATGTTGGAGCAGTAATTCATTACAGTTTACCTGGAAGTCTGGAAGAGTATGTACAGGAAATAGGACGTGCTGGGAGAGATGGAAGGTTGTCCTACTGTCACCTATTTTATGATAATGAGATGTATTTCAAACTCCGTAGTCTAATGTACAGTGAAGGAGTAGATAAATATGCAGTGAATAAATTTCTGTCTGAAGTGTTTCCTGCTGACAAAAGCTCCTGTGGGAAAATATGTTCGTTAATCAAAGAATCTGCTTCACGCAGATTTGACATGAAGGAAGAGGTGATTCTCACTGTTTTGACACGCTTAGAGCTGGGTGATGTGCAGTACTTACATTTACTTCCACAGACAAATGTTACTTGTGTTCTGAATTTTTACAAGACTCCGGCTGTGTCCCTTGCCCAAAAGGTTTCTGCTATTGCTGTGATTCTGAAAAGATCTGAAAATAGACACGGACAACATACTTTTGATCTTCCAACTGTGGCAAATGACATGGGGGTCACACCAGTTGAATTAACAAATCAGTTGTATGACCTAAAGTTGAAGGGAGAAATAACTTATGAAATGAAAGACATGGCCTACTGTTATAGGATTCTTGAAGTCCCAACAGACTTATTGTCTCTATCGGCATATATTACCAAATGGTTATCTGAAGTTGAAAGTTGTAAGGTGCGGAAAATGGATGCAATGTTTAATGCTGCATATTTTGCAGTCAATCTATGTGATAAGATGAACGGTTGCAGTAGTGCCGATCACACTTCATGCTTGCAAAGGATAATATTGGACTACTTTGCTGGAATTGATAATATTGATTTCTGCAAGAAAATCGATCAAAGCAGCTGGTATTTACATATGCAGTCCTTTCCTATAAAGGTTTTTCTACAGAGCAATTCACATGCTCGCTTTACACCAAGAGCTGTTGCGAGGGTTATGCACGGAATTGCAAGCCCAGCCTACCCTTATACAATATGGGGTAAAACCCATTTCTGGGGAAGGTATACCAAGATAGACTTTAAAGTGGTGATGGAAGCAGCAAAGGAAGAACTTAAAAAATTTGTTGGGAAGGATATTCTGTAG 1605 0.3875 MRLRASLLHRSLNVGSVLAMTATATTTTLDAIMSALDIPFTNLIQNAHLRDNLRLSASLIKNRQVRCFYFTASDCTPFNFPSLILLNVFINDRMKDLLVLIKSPPFAGVKSIIVYCKFQSETDQISRYLNDNNISAKSYHSGIFAKERGNVQELFASNKIRVVVATVAFGMGLDKRDVGAVIHYSLPGSLEEYVQEIGRAGRDGRLSYCHLFYDNEMYFKLRSLMYSEGVDKYAVNKFLSEVFPADKSSCGKICSLIKESASRRFDMKEEVILTVLTRLELGDVQYLHLLPQTNVTCVLNFYKTPAVSLAQKVSAIAVILKRSENRHGQHTFDLPTVANDMGVTPVELTNQLYDLKLKGEITYEMKDMAYCYRILEVPTDLLSLSAYITKWLSEVESCKVRKMDAMFNAAYFAVNLCDKMNGCSSADHTSCLQRIILDYFAGIDNIDFCKKIDQSSWYLHMQSFPIKVFLQSNSHARFTPRAVARVMHGIASPAYPYTIWGKTHFWGRYTKIDFKVVMEAAKEELKKFVGKDIL 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03430 534 FunFam ATP-dependent DNA helicase Q-like 5 50 271 - -
Vifa6g03430 534 PANTHER DNA HELICASE RECQ FAMILY MEMBER 5 397 - -
Vifa6g03430 534 SMART helicmild6 123 204 IPR001650 -
Vifa6g03430 534 Pfam Helicase conserved C-terminal domain 110 203 IPR001650 -
Vifa6g03430 534 Gene3D - 91 271 IPR027417 -
Vifa6g03430 534 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 93 243 IPR001650 -
Vifa6g03430 534 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 229 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03430 Vifa-Chr6 1129476070 1129481604 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03430 109 236 Eukaryotic Initiation Factors Gene Family AT3G19760 29.231 5.63e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03430 K10730 - gmx:100811214 799.66