Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03428 ATGAATTTTGTAAAGAAGTGTAAGAGGGTATTGGGAAGCAGCAAGAGTTTGTATGATCCACAAGACAGTAGTAGAAGTGGAAGCTATGGAAGATTATCAGACAAGTTTCACAAAAAGCAAAAAGATAATACTAAGAAACCACCAAATGGTTGTGTTTGTGTCTACGTTGGACCTGAGAGACAGAGATTCATAATCAAGATCAAAATATTCAATCACCCTTTGTTCAAAACATTTTTGGAAGATGTTGAGAATGAATATGGTTACAGAAATGATGGTCCTCTATGGCTTCCTTGTCATGTTGAAATGTTCTGTGAAGCACTTGTGGAGATAGAGGGTCACAAACACAGCTCAGTTTCACAACATTCTCCATCGTCTTGTCGTTCTAACTTGAGCTCATGGGATGGAAATTACGAGGTTTTGGAATGA 426 0.3779 MNFVKKCKRVLGSSKSLYDPQDSSRSGSYGRLSDKFHKKQKDNTKKPPNGCVCVYVGPERQRFIIKIKIFNHPLFKTFLEDVENEYGYRNDGPLWLPCHVEMFCEALVEIEGHKHSSVSQHSPSSCRSNLSSWDGNYEVLE 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03428 141 Pfam Auxin responsive protein 8 107 IPR003676 GO:0009733
Vifa6g03428 141 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 39 107 IPR003676 GO:0009733
Vifa6g03428 141 MobiDBLite consensus disorder prediction 16 30 - -
Vifa6g03428 141 MobiDBLite consensus disorder prediction 16 48 - -
Vifa6g03428 141 MobiDBLite consensus disorder prediction 31 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03428 Vifa-Chr6 1128784982 1128785407 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03428 48 123 Calmodulin-binding Proteins AT3G43120 46.053 3.37e-17 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03428 K14488 - gmx:102667331 134.42