Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03422 ATGGAAAAGCTGAATTTTATTAAAAATGGAGTGAGTAGATTGCCTCCCGGTTTTCGTTTCCAACCGACCGATGAAGAACTTGTTTTTCAGTATTTGAAATGTAAAATCTTCTCATGCCCCTTGCCAGCTTCCATCATTCCTGAGGTCAATGTTTGCAAGTATGATCCTTGGGATTTGCCAGGAGGTTGTGATGAACATGAGAGGCACTTTTTCAGCTCCAAGGAAGCAAAATATAGGAATAGTAATAGGATGAGTAGAACAACAAAATGTGGATATTGGAAGGCAACAGGATCAGACAAAAGAATTTCATCTTCAAGTTGTAATGGCATTGTTGGGATAAGAAAAACCCTAGTTTTTTATCAAGGAAAATCTCCAAATGGTTCTAGAACTAATTGGATCTTGCATGAATATCGCCTCGTCAATGTAGAAACTAGTCCTTGCAATTCAACCCAGAATTATGGAAACGAAATAGGAGATTGGCTTCTATGTCGATTATCGACAAGGAAAAGAAATTTGGAATATGGAAGCACTAGTACTAAAAATAAGAACAATAATGCTACTCCTAATTCGAGATTAATGTTTGATTTTATGATGGTAAACAACAAGACATGTTCTTCTACTTCATCTTCATGTTCAAGTTCAAGTAACAATAACATTGAGGTCTCTTCAAATCTACAAGATCATGAACAAGATTATGCTGATCATTTTTAA 711 0.3558 MEKLNFIKNGVSRLPPGFRFQPTDEELVFQYLKCKIFSCPLPASIIPEVNVCKYDPWDLPGGCDEHERHFFSSKEAKYRNSNRMSRTTKCGYWKATGSDKRISSSSCNGIVGIRKTLVFYQGKSPNGSRTNWILHEYRLVNVETSPCNSTQNYGNEIGDWLLCRLSTRKRNLEYGSTSTKNKNNNATPNSRLMFDFMMVNNKTCSSTSSSCSSSSNNNIEVSSNLQDHEQDYADHF 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03422 236 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 218 - -
Vifa6g03422 236 Gene3D NAC domain 23 174 IPR036093 GO:0003677|GO:0006355
Vifa6g03422 236 SUPERFAMILY NAC domain 10 166 IPR036093 GO:0003677|GO:0006355
Vifa6g03422 236 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Vifa6g03422 236 MobiDBLite consensus disorder prediction 208 226 - -
Vifa6g03422 236 ProSiteProfiles NAC domain profile. 14 168 IPR003441 GO:0003677|GO:0006355
Vifa6g03422 236 MobiDBLite consensus disorder prediction 208 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03422 Vifa-Chr6 1124111965 1124112926 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03422 1 170 NAC Transcription Factor Family AT5G13180 61.176 2.32e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa6g03422 NAM 3.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03422 - - gmx:100812015 343.199