Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03419 ATGGACGATGACCGGCAATATGAAAACGGTAGGCATAAGGTGGAATACTACAGAGGAGCACATTCCCCGTGGAATGTGGATCCCCAGCATCAAATAAAGGAACAAAATGCCCTAGTTATGAATAAAAAAATTAGGTCCATTATGGCTGAGAGGCAGGCTACTATTCTGGAAATTGAACTAGAAGCTGCTATCTCTGAAAAGAATGAAGCCTTGGCTGCTCGAGACGTTGCCCTTAGGCAGAGGGATGAAGCACTCACTCAGAGAGATAATGCTCTGTTGGAACGGGATAATGCCCTTGCAGCCCTTCAATGTCGGAATAGTTCTGCCAACTTTTCATTCAACGGTGGAAATCATCGTGGATCAAAGCGGATGCACCATTCTTCAAACCGTAGTCTATCCAACATGACAGAAGCAGCGTATAGCTCGACAGATATAATAATAAGAGATGCCTCCCCAGTAACTGTTATAACTTCAGAAGCCATCGCGTCTCATCTAACAAATATGACAAAGGATAATTCCAAGGCATCAAAGTCACCTACAAAAGTAAAGAAAGTGGGCGAGGATTTAAATAGGAAGGCATATTCTGAAGGAACAAAGATCAAATCTGAATGGGATAGACAGGATGTTGGCTTGAATTTGATTACTTTCGATGAATCTGTCATGCCTGTCCCAGTTTGCACGTGTACCGGAGTATCACGACAGTGCTACAAATGGGGGAATGGTGGGTGGCAATCATCTTGTTGTACTACTACACTGTCGATGTATCCGCTACCGCAGCTTCCAAACAAGCGCCATGCTCGCATTGGAGGTAGGAAAATGAGCGGCAGTGTTTTTACAAGACTTCTCAGTAGGTTTGCATCGGAAGGCCATGATTTATCTATACCGTTGGATCTTAAGGATTACTGGGCCAGACATGGAACAAATCGCTACATTACCATCAAGTAG 945 0.4402 MDDDRQYENGRHKVEYYRGAHSPWNVDPQHQIKEQNALVMNKKIRSIMAERQATILEIELEAAISEKNEALAARDVALRQRDEALTQRDNALLERDNALAALQCRNSSANFSFNGGNHRGSKRMHHSSNRSLSNMTEAAYSSTDIIIRDASPVTVITSEAIASHLTNMTKDNSKASKSPTKVKKVGEDLNRKAYSEGTKIKSEWDRQDVGLNLITFDESVMPVPVCTCTGVSRQCYKWGNGGWQSSCCTTTLSMYPLPQLPNKRHARIGGRKMSGSVFTRLLSRFASEGHDLSIPLDLKDYWARHGTNRYITIK 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03419 314 SMART GAGA_bind_2 1 314 IPR010409 -
Vifa6g03419 314 PANTHER - 1 314 IPR010409 -
Vifa6g03419 314 Pfam GAGA binding protein-like family 1 314 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03419 Vifa-Chr6 1123641552 1123642592 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03419 1 314 BBR or BPC Transcription factor family AT2G21240 57.460 2.96e-128 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Vifa6g03419 GAGA_bind 9.5e-97 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03419 - - gmx:100813103 515.768