Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03415 ATGGCAGCTTTTTCATATCAACAACTACCTTTTCTTGTTGACTCTTCATCTTACTTCACTAGTATAAACACTTGTCTTGCTCCTCATACTCTTCATGAAAACTCTCTTAGTAATCAAGAAACTAGTTGTGTTGATCAAACCTCTAAGAATAGTTTAAGTCCTGAATCCTCTATGGTGGTTGATATTCTTGAAAAGGGTGAACAAGTTACTCAGAAAGTGAGTTCTATGGAGAAGAAGAGAAGGGTTAGAACAAACAAGGCTTCTTCCAGTAGTCCCTTATCTAAGGAGTCAAAAGAAGAGATAAACAAGAAACAAAAGAAGACTAGTGGTGAAGGGATGAAAGGAGAAGAGAAGAAGGATCAAAAGAAATTTTCTCAAGAGGCTCCTCCAACTGGCTATATCCATGTTAGAGCAAGAAGAGGTCAGGCAACAGATAGCCACAGCCTTGCTGAAAGGGTGAGAAGAGAGAAAATAAGTGAAAGGATGAAGATATTGCAGCAACTTGTGCCTGGCTGTGATAAAGTAACTGGAAAAGCTCTTGTGTTGGATGAAATAATCAATTATGTACAATCCTTACAGAATCAAGTAGAGTTCTTGTCAATGAAGATTGCATCAGTGAATCCAATCTACTTTGACTTTGCATTGGACTTAGAGATGGTTAGACCAGATCATGAGAGATTAAATAGCATAACATCACCATCACCATCATCAACACCACTGCAATCTGTACCATTATGCAACCCCAACCATGCCACACCTTTTGCTGACACAACCCTCACAAGCTTCCACCATGCTGCACCTAATAATGAATATCTTTTGGATTATTCAGCATCAGTTTTTCTTCAAGGACAGAGGTCAAATACCTTCTTTGAGCACACTGATGGGCCATATTGGGACTTAGAAGAGCAACGACAAAAGCTTCTTAATCCATATGGATTCAGCAACAATACATGTTCCTTAAATTAA 966 0.3861 MAAFSYQQLPFLVDSSSYFTSINTCLAPHTLHENSLSNQETSCVDQTSKNSLSPESSMVVDILEKGEQVTQKVSSMEKKRRVRTNKASSSSPLSKESKEEINKKQKKTSGEGMKGEEKKDQKKFSQEAPPTGYIHVRARRGQATDSHSLAERVRREKISERMKILQQLVPGCDKVTGKALVLDEIINYVQSLQNQVEFLSMKIASVNPIYFDFALDLEMVRPDHERLNSITSPSPSSTPLQSVPLCNPNHATPFADTTLTSFHHAAPNNEYLLDYSASVFLQGQRSNTFFEHTDGPYWDLEEQRQKLLNPYGFSNNTCSLN 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03415 321 MobiDBLite consensus disorder prediction 96 125 - -
Vifa6g03415 321 Gene3D - 139 208 IPR036638 GO:0046983
Vifa6g03415 321 FunFam Basic helix-loop-helix transcription factor 139 211 - -
Vifa6g03415 321 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 140 208 IPR036638 GO:0046983
Vifa6g03415 321 Pfam Helix-loop-helix DNA-binding domain 146 193 IPR011598 GO:0046983
Vifa6g03415 321 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 39 239 IPR024097 GO:0006355
Vifa6g03415 321 CDD bHLH_AtBPE_like 132 217 - -
Vifa6g03415 321 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 142 192 IPR011598 GO:0046983
Vifa6g03415 321 SMART finulus 148 198 IPR011598 GO:0046983
Vifa6g03415 321 MobiDBLite consensus disorder prediction 70 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03415 Vifa-Chr6 1122108446 1122110395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03415 109 251 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 62.745 3.68e-57 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa6g03415 HLH 4.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03415 - - gmx:100796018 343.199