Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03411 ATGGCTTTGTTTGACAAATCATCTCGCAACTCTCTTCTCCCTGGATTTCTTTACTCATCAAATGCACTCTCCCATTTGGATTCTTCTTCATTCAACCATGCACCATCATCACCACCACGACCACGTAGGAATAATATTCCTATGATGATCCCTTCACCAGCCGAAAGTAGTATCCCCATGTTTTCTCCGGCTTACTACGCTGCATGCAGTGCCGGTGGCGTCTTCAGCTGTGGCCTTACTCACATGGCTGTCACCCCTCTTGATCTTGTCAAGTGCAACATGCAGATTGACCCTGCAAAGTATAAGAGTATCACATCAGGATTTGGAGTTTTGCTTAAGGAGCAAGGTGCTAGAGGTTTCTTCAAAGGATGGGTGCCAACTTTGCTTGGTTATAGTGCTCAAGGAGCATGCAAGTTTGGATTTTATGAATTCTTCAAAAAGTATTACTCAGATCTTGCAGGAGTAGAGAATGCAGTCAAGTACAAAACTTTCATTTATCTAGCTGGTTCTGCTTCTGCTGAAGTTATTGCTGATGTTGCCCTTTGTCCTATGGAGGCTGTCAAGGTTCGCGTACAAACTCAGCCTGGCTTTGCTCGAGGTTTGTCCGATGGGTTGCCCAAGTTTATCAAGGCTGATGGTGTTTCTGGGTTGTATAGAGGACTTGTTCCTCTATGGGGCCGTCAGATACCATACACTATGATGAAATTTGCTTCCTTTGAGACTATTGTGGAGATGATCTACAAATATGCCATTCCAACTCCAAAAGCACAATGCAGCAAAAGTAAGCAGCTTGGAGTGAGTTTTGCAGCAGGATATGTTGCAGGTGTACTGTGTGCAATTGTCTCACACCCTGCTGATAATCTTGTTTCTTTTCTCAACAATGCCAAGGGAGCCACTGTTGGTGATGCAGTGAAGAAGATTGGAGTAGTTGGTCTTTTCACTCGCGGCCTTCCTCTTCGTATAGTTATGATTGGAACACTAACCGGAGCTCAGTGGGGTCTCTATGATTCATTTAAAGTATTTGTAGGACTGCCAACTACCGGTGGAGCTGCTCCTCCCGAACCTACACCTACGAAATAA 1080 0.4472 MALFDKSSRNSLLPGFLYSSNALSHLDSSSFNHAPSSPPRPRRNNIPMMIPSPAESSIPMFSPAYYAACSAGGVFSCGLTHMAVTPLDLVKCNMQIDPAKYKSITSGFGVLLKEQGARGFFKGWVPTLLGYSAQGACKFGFYEFFKKYYSDLAGVENAVKYKTFIYLAGSASAEVIADVALCPMEAVKVRVQTQPGFARGLSDGLPKFIKADGVSGLYRGLVPLWGRQIPYTMMKFASFETIVEMIYKYAIPTPKAQCSKSKQLGVSFAAGYVAGVLCAIVSHPADNLVSFLNNAKGATVGDAVKKIGVVGLFTRGLPLRIVMIGTLTGAQWGLYDSFKVFVGLPTTGGAAPPEPTPTK 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03411 359 ProSiteProfiles Solute carrier (Solcar) repeat profile. 64 148 IPR018108 -
Vifa6g03411 359 Pfam Mitochondrial carrier protein 67 150 IPR018108 -
Vifa6g03411 359 Pfam Mitochondrial carrier protein 163 249 IPR018108 -
Vifa6g03411 359 Gene3D Mitochondrial carrier domain 65 342 IPR023395 -
Vifa6g03411 359 ProSiteProfiles Solute carrier (Solcar) repeat profile. 262 341 IPR018108 -
Vifa6g03411 359 MobiDBLite consensus disorder prediction 29 49 - -
Vifa6g03411 359 SUPERFAMILY Mitochondrial carrier 65 336 IPR023395 -
Vifa6g03411 359 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 53 352 IPR044677 GO:0005315|GO:1990547
Vifa6g03411 359 ProSiteProfiles Solute carrier (Solcar) repeat profile. 161 245 IPR018108 -
Vifa6g03411 359 FunFam Phosphate carrier protein, mitochondrial 64 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03411 Vifa-Chr6 1120842546 1120844344 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03411 6 352 Chloroplast and Mitochondria Gene Families AT5G14040 74.931 0.0 544
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03411 K15102 - gmx:100800530 574.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03411 6 1120842546 1120844344 Vifa6g03411 6 1120842546 1120844344 ECH