Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03409 ATGGCAAATCATGAAAAGCAGGGAAAAGATCAAGAGAAGGAATTGGAATTCCTAAGTGACGACTCTGAATCTGAATTTGAGGTTCCCTTGCCTCTCACCGTCACTTCGAGGGCTTTGTATATGTTGGGAGATATAACTGCAGGGCCTGCGTTTAGGTTCACGCAATGGCTCCGTTTGGTTCGTAAACGCACTTCCAAGTATCGCAATTCTGGTTTCCCTCATAGTCCTTCAACCACCATGTCTTCTAATTCTAGCATCAGAGACTTGATTGATGATAAAAAATGTGATATGCAACTTGATCAAACAGAAATTAGCTTGTGGGAGAGACTTGGGAAAGCTGCAATGTTGGATATTGAATCAAGCTCCTTTTCTTGGGATAGTCTGTCTTCACTGCACCATACTGAACATAGCAGTAGCAATGAACACTCTGAGGATGAAATGAACAAAGCTCTTGAGGTAACCGTGAATTCTGGAGGCGTTGTCTTTTTTGCCTTTTTCAATGGTCAAGGGAGCGCTGATGCTTTTCCGAAAGAGGAAGCAGCTGTTATAAAAATAGCGTCATCAAGAATGGCGACACAGTCTGAACGCCTTGGATATGAACTTGCGAAGTGGCTAGGAATCCAAACTCCGCAGGCTAGAGTCATTCATAACACCAGTTCAGAATGGCAACAAATAAAGGAAGCTACAGAAAAAGCTAGAGAAGCGGCGTCGAATTCTCAGAGTGATGAAGTTGGTGAAGTGACATGTTTTGAACTTTTGGAAGCTCTAGAGCTTAGCCGATGTCTGTTTCTAATGAGTTATGTACATGGTTCACCTTTGCTTGAAAACATTAGTGCCTTTGAGTCACGAGAATCTGCCGAAAAAACATCAGAAGCTCTTGGCAGGGTACTGATGTTGGACTTAGTAATTCGAAATGAAGATAGGCTCCCTTGCCGTGAACTTAGATGGCGTGGGAATTCTGCTAACTTGCTGTTAGCTGAAAAGATGATCTCTGCAAATACAAATACACTAGAAGCAGCTTTGGATTCTGCAATGAATCTTTATAGACCAAAGGTGGTTAGGGCACTTCAAAAAGAAAGAAGGTCGAGTTCAGTAGATAGATTGAATTCCCATAATCCTGGCTTAATATCACAAGCCTCCGACCTTTCAGAAGCAGCAGAATCGCCAATGTCCACTGACATAAGCCTTAAAAGTGAAATGTCGGGAGAATTAATGTCTTCTGACCTTAACATTGTAGTCATTGATTCTGGTGTTCCTCGTCGACCCCCAGCTGGAAAACGTGCAAATGATCAGGTTAATTATCCTAAGTTGGTTGAATTGCTAATCAATAGTTCTGAGTATGCATCGAATCTGTTACATGATATAACTGGAGGGAAATTAGGATGTCCTCTACTAGAAAACATGGATACAACTGATATACATACAAGTGACATGACATCAGTTCATGCATTTCGTACTGGTTTTCGAGGTGCACTTAGAGATCTACAAGGATTTCATATATTCTTACTCACCCTTCACCAAAGACTTGATACTTTGTTACGATCATTTATGAACATTATAAGCAAAATATCTTCAGGGGAGTCCGACAAAGAGGACTTGTTGGTTCCTGATTCTCCTTCACTGGCTAGTGGCGGTAGTTGTTCCTCTCCAACATGTAAAGATAGGCATGCCAATGATAATAATCAAGATTTTGCTGATTCAGAATCACAGAGAACTCCTTCAAAGTCACTGTCTTCGTGTAATAGAGATTGTAGTGACTTGACTTCTGGGTCCAAAGAAAATTGGCATGGGAAGTTCACTAAAGGAAATGGGGAGCCACATCGTAATCTCCGTTTGACAGCTAAGCTTCGCGACTTTAATAAATTTGCCAAGGTTGATGCTGAATCTAGTAAAGAATTGGAACAGTGGAATGAAATGCTTAAAAATGATGCCGTCAAGCTATGCCAGGAGAACAATTTCAATACAGGATTTTTTGAGGGTAGTGATAATAACAGTGTTGTTGATGCATATGAACTGAAGGTCCGACTTGAGCATATTCTTGAGAGAATTGCATTGATATCTGATGCAGCAAGTACCGAGAAACCATCTGCTGTTACAAGCTGTCTATTCATTGGTGGGGCATTGGCGGCAAGATCTGTATACACTCTTCAATACTTGGGAATTACACATATTTTGTGTTTGTGTACAAATGAAATTGGACAATCTGAAACTCAATTTCCTGATGTATTTGAATACAAAAATTTCTCTGTATGTGACAATGAAGATTTTAACATCACCACCGTATTTGATGAAGCGTGTGACTTTATAGATTGTGTTGAACAAAAAGGTCAGAAAATTTTAGTCCATTGCTTTGAAGGGAAAAGCAGAAGTGTTACATTGGTCCTTGCTTACCTAATGCTCAGGAAGAAGTATACTTTATCAAAAGCATGGCAAACAATGAAACTAGTTCACCGTCGAGCACAGCCAAATGATGGTTTTGCAAAGATCTTACAAGTATTGGATCAGAAGCTACACGGAAAGGTTTCATTGGAGTGGCAACAGAGGAAACCAACAATGAAAGTATGTCCCATCTGCGGAAAAAATGCCGGGCTAAGTAGCAGCTCGCTTAAACTACACCTGCAGAAATCACATAGAAAGCTGTCATCTGGTAGTGTTGATAGTGCCATGACAATGGAGATTCAAAAGGCGTTAACAGCTTTGAAGATTAGCCGTAGTGGGAGTGTTAGCCCGACTCAAAGGTCGTCTCATTCAATAATAGATCAATAG 2766 0.406 MANHEKQGKDQEKELEFLSDDSESEFEVPLPLTVTSRALYMLGDITAGPAFRFTQWLRLVRKRTSKYRNSGFPHSPSTTMSSNSSIRDLIDDKKCDMQLDQTEISLWERLGKAAMLDIESSSFSWDSLSSLHHTEHSSSNEHSEDEMNKALEVTVNSGGVVFFAFFNGQGSADAFPKEEAAVIKIASSRMATQSERLGYELAKWLGIQTPQARVIHNTSSEWQQIKEATEKAREAASNSQSDEVGEVTCFELLEALELSRCLFLMSYVHGSPLLENISAFESRESAEKTSEALGRVLMLDLVIRNEDRLPCRELRWRGNSANLLLAEKMISANTNTLEAALDSAMNLYRPKVVRALQKERRSSSVDRLNSHNPGLISQASDLSEAAESPMSTDISLKSEMSGELMSSDLNIVVIDSGVPRRPPAGKRANDQVNYPKLVELLINSSEYASNLLHDITGGKLGCPLLENMDTTDIHTSDMTSVHAFRTGFRGALRDLQGFHIFLLTLHQRLDTLLRSFMNIISKISSGESDKEDLLVPDSPSLASGGSCSSPTCKDRHANDNNQDFADSESQRTPSKSLSSCNRDCSDLTSGSKENWHGKFTKGNGEPHRNLRLTAKLRDFNKFAKVDAESSKELEQWNEMLKNDAVKLCQENNFNTGFFEGSDNNSVVDAYELKVRLEHILERIALISDAASTEKPSAVTSCLFIGGALAARSVYTLQYLGITHILCLCTNEIGQSETQFPDVFEYKNFSVCDNEDFNITTVFDEACDFIDCVEQKGQKILVHCFEGKSRSVTLVLAYLMLRKKYTLSKAWQTMKLVHRRAQPNDGFAKILQVLDQKLHGKVSLEWQQRKPTMKVCPICGKNAGLSSSSLKLHLQKSHRKLSSGSVDSAMTMEIQKALTALKISRSGSVSPTQRSSHSIIDQ 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03409 921 Pfam Actin-fragmin kinase, catalytic 103 417 IPR015275 -
Vifa6g03409 921 Pfam Dual specificity phosphatase, catalytic domain 709 831 IPR000340 GO:0008138|GO:0016311
Vifa6g03409 921 Coils Coil 1 21 - -
Vifa6g03409 921 ProSiteProfiles Dual specificity protein phosphatase domain profile. 694 839 IPR020422 GO:0006470|GO:0008138
Vifa6g03409 921 MobiDBLite consensus disorder prediction 1 22 - -
Vifa6g03409 921 Gene3D Protein tyrosine phosphatase superfamily 669 840 IPR029021 -
Vifa6g03409 921 MobiDBLite consensus disorder prediction 359 390 - -
Vifa6g03409 921 SUPERFAMILY Protein kinase-like (PK-like) 55 431 IPR011009 -
Vifa6g03409 921 MobiDBLite consensus disorder prediction 528 587 - -
Vifa6g03409 921 SMART dsp_5 694 836 IPR020422 GO:0006470|GO:0008138
Vifa6g03409 921 MobiDBLite consensus disorder prediction 367 390 - -
Vifa6g03409 921 MobiDBLite consensus disorder prediction 563 587 - -
Vifa6g03409 921 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 694 839 IPR029021 -
Vifa6g03409 921 Gene3D - 273 405 IPR036940 -
Vifa6g03409 921 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 16 920 IPR035010 GO:0004721|GO:0009737|GO:0043622
Vifa6g03409 921 MobiDBLite consensus disorder prediction 1 16 - -
Vifa6g03409 921 CDD DSP 695 831 - -
Vifa6g03409 921 MobiDBLite consensus disorder prediction 541 555 - -
Vifa6g03409 921 FunFam Dual specificity protein phosphatase PHS1 666 840 - -
Vifa6g03409 921 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 763 814 IPR000387 GO:0016311|GO:0016791
Vifa6g03409 921 Gene3D - 106 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03409 Vifa-Chr6 1120560542 1120564973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03409 7 903 Protein tyrosine phosphatase (PTP) family AT5G23720 63.286 0.0 1112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03409 K14165 - gmx:100791993 1431