Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03406 ATGTTTGGGATGAGAGATCTGGAGGAAGAAAGAGAGAGAAGAGATAACATGGCGTCGTCTGAGGTTTCTATGAAGGGGAATTGTGTGAATGGAAAAGGTGAAACAAACGAGGGTGTTGGTGATGGTCAAAATGGCTCTTCGTCTTCATCATCAGGAGAGGCTGCTGAGGCTCAACTTTACAGAGAACTATGGCATGCTTGTGCGGGACCGTTGGTGACGGTTCCGAGAGAAAGAGAGCTTGTGTTTTATTTTCCTCAAGGACATATTGAACAGGTGGAGGCTTCGACGAATCAAGCGTCGGAACAACACATGCCGGTTTACGATCTCCGACCTAAGATCCTTTGTCGGGTCATCAACGTTATGTTGAATGCGGAGCCTGATACTGATGAGGTGTTTGCACAAGTGACTTTGGTTCCGGAGCCAAATCAAGATGAGAATGCTGTTGAGAAAGAAGCTCCTCCTACACCTCCTCCGCGGTTTCATGTTCATTCGTTTTGTAAAACGTTGACAGCTTCTGATACTAGTACCCATGGTGGGTTTTCTGTTCTTAGACGTCATGCTGATGAATGTCTTCCTCCACTGGATATGTCAAAGCAACCACCTACACAGGAGTTGGTGGCAAAAGATCTGCATGGAAATGAATGGCGTTTTAGACACATCTTTCGCGGTCAACCACGTAGACACTTGCTGCAAAGTGGTTGGAGTGTTTTTGTCAGTTCTAAGAGGCTTGTTGCTGGAGATGCATTTATATTTCTAAGAGGTGAGAATGGGGAGCTCCGAGTTGGTGTAAGGCGTGCAATGAGGCAGCAGGGTAATGTTCCATCCTCGGTTATATCTAGCCACAGCATGCATCTTGGTGTTCTTGCTACCGCTTGGCATGCTGTGTTGACGGGGACCATGTTCACTGTCTATTACAAACCTCGGACCAGTCCAGCGGAATTTATTGTTCCGTATGACCAGTACATGGAGTCTCTCAAAAATAATTATACCATAGGCATGCGGTTCAAGATGAGGTTTGAGGGTGAAGAGGCTCCTGAACAAAGGTTTACCGGGACCATCGTTGGAATTGAAGACTCAGACACTAAAAGATGGCCTAAATCTAAATGGAGATGTCTCAAGGTTAGATGGGATGAAACATCTAACATACCTCGTCCTGAGAGAGTTTCCCCTTGGAAAATAGAGCCTGCTCTGGCTCCTCCAGCTCTGAATCCTCTTCCAATGCCCAGGCCTAAAAGGCCTCGAGCTAACATTGTTCCATCATCTCCAGATTCTTCTGTTCTTACTCGTGAAGCATCGTCTAAAGTAAGCATGGACCCTTTGCCCGCTAGCGGTTATCAAAGGGTCTTGCAAGGTCAAGAGTCATCGACCTTGAGAGGAAATTTGGCAGAGAGCAATGAGTCTTATACTGCAGAGAAGTCCGTTGTGTGGCCACCAGCAAACGATGAAGAAAAGATTGACGCTGTTTCTACTTCAAGAAGATATGGATCAGAGAACTGGATGTCGATGTCAAGGCACGAGCCTACATATTCGGATCTTCTATCAGGATTTGGTAGTGCCCGAGGAGATCATTCATCCCAACAGATGTTCATTGATCAAACTGGTCATCTGGTAAATCATACTAGGAAAAGTTTGTTGGATCGCGATGGCAAACATAACATGCTTAATCAGTGGTCTGTAATGCCACCTGGTCTGTCGCTCAATTTCTTGCACTCTAATATGAAAGGTTCTCCACAAGGTGGCGATAGTTCAACTTACCAAGTTCCAGGGAATATTAGATATAGCGCGTTTGGGGATTATTCTGTGCTTCATGGCCATAAAGTTGAAAATCTGCATGGAAACTTTTTGATGCCGCCACCACCTCCAACTCAATACGAGAGTCCTCGTTCAAGAGAACTTCCTCATAAACAAATACCTGCAACTACAACTGAGGCTTCAAAACAGAAAGACGGCGAATGTAAGCTTTTTGGGTTCTCGCTTCTCAGTAGCCCCACTATGCAAGAGCCTTCAATATCACAAAAAAATAATACAAGTGAGACAGTTAGCCCCATGCAAATTTCATCGCAACAACATTATACATTTGAAAATGATCAGAAGTCCGAGCATTCAAAGAGCTCAAAACTGACAGATAATCCCGTTGTAGTCGATGACCAAGAGAATCTAATTCAAACTCCTCAATCTCAACTTAATGATGTTCAAGTCAAATCTCAAAATAGTTCTGCTCGAAGTTGCACAAAAGTACACAAGAAAGGTATCGCGCTTGGTAGGTCGGTTGATCTTACAAAGTTTAACGACTACGATGAACTAGTCACTGAATTGGATCAACTGTTTGAATTCGGAGGCGAATTAGCATCTCCACAAAAAGATTGGCTTGTTGTCTACACTGACAATGAGGGTGACATGATGCTTGTTGGTGATGATCCATGGCAGGAGTTTTGCTCGATGGTCCGCAAAATCTACATCTACCCAAAAGAAGAGATTCAGAAAATGAGCCCCGGTACATTGAGTTCAAAGAACGAGGAGCATCATTCAGGTACCGATGGCGGAGACGCACAGGAAACAAAATGTCAGATGAATCAAACAACCTCAGATGCTTGA 2595 0.4447 MFGMRDLEEERERRDNMASSEVSMKGNCVNGKGETNEGVGDGQNGSSSSSSGEAAEAQLYRELWHACAGPLVTVPRERELVFYFPQGHIEQVEASTNQASEQHMPVYDLRPKILCRVINVMLNAEPDTDEVFAQVTLVPEPNQDENAVEKEAPPTPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVLTGTMFTVYYKPRTSPAEFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDSDTKRWPKSKWRCLKVRWDETSNIPRPERVSPWKIEPALAPPALNPLPMPRPKRPRANIVPSSPDSSVLTREASSKVSMDPLPASGYQRVLQGQESSTLRGNLAESNESYTAEKSVVWPPANDEEKIDAVSTSRRYGSENWMSMSRHEPTYSDLLSGFGSARGDHSSQQMFIDQTGHLVNHTRKSLLDRDGKHNMLNQWSVMPPGLSLNFLHSNMKGSPQGGDSSTYQVPGNIRYSAFGDYSVLHGHKVENLHGNFLMPPPPPTQYESPRSRELPHKQIPATTTEASKQKDGECKLFGFSLLSSPTMQEPSISQKNNTSETVSPMQISSQQHYTFENDQKSEHSKSSKLTDNPVVVDDQENLIQTPQSQLNDVQVKSQNSSARSCTKVHKKGIALGRSVDLTKFNDYDELVTELDQLFEFGGELASPQKDWLVVYTDNEGDMMLVGDDPWQEFCSMVRKIYIYPKEEIQKMSPGTLSSKNEEHHSGTDGGDAQETKCQMNQTTSDA 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03406 864 MobiDBLite consensus disorder prediction 37 53 - -
Vifa6g03406 864 MobiDBLite consensus disorder prediction 399 415 - -
Vifa6g03406 864 MobiDBLite consensus disorder prediction 663 684 - -
Vifa6g03406 864 Gene3D - 162 267 IPR015300 -
Vifa6g03406 864 SMART B3_2 165 267 IPR003340 GO:0003677
Vifa6g03406 864 MobiDBLite consensus disorder prediction 1 19 - -
Vifa6g03406 864 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 57 830 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vifa6g03406 864 MobiDBLite consensus disorder prediction 1 53 - -
Vifa6g03406 864 MobiDBLite consensus disorder prediction 399 441 - -
Vifa6g03406 864 Pfam B3 DNA binding domain 165 266 IPR003340 GO:0003677
Vifa6g03406 864 SUPERFAMILY DNA-binding pseudobarrel domain 161 294 IPR015300 -
Vifa6g03406 864 ProSiteProfiles PB1 domain profile. 741 823 IPR000270 GO:0005515
Vifa6g03406 864 MobiDBLite consensus disorder prediction 849 864 - -
Vifa6g03406 864 FunFam Auxin response factor 328 400 - -
Vifa6g03406 864 FunFam Auxin response factor 736 830 - -
Vifa6g03406 864 CDD B3_DNA 163 265 IPR003340 GO:0003677
Vifa6g03406 864 MobiDBLite consensus disorder prediction 830 864 - -
Vifa6g03406 864 Pfam AUX/IAA family 655 777 IPR033389 -
Vifa6g03406 864 Pfam AUX/IAA family 787 828 IPR033389 -
Vifa6g03406 864 FunFam Auxin response factor 163 267 - -
Vifa6g03406 864 Gene3D - 328 398 - -
Vifa6g03406 864 Pfam Auxin response factor 291 373 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vifa6g03406 864 ProSiteProfiles B3 DNA-binding domain profile. 165 267 IPR003340 GO:0003677
Vifa6g03406 864 SUPERFAMILY CAD & PB1 domains 738 818 - -
Vifa6g03406 864 Gene3D - 736 830 - -
Vifa6g03406 864 MobiDBLite consensus disorder prediction 612 632 - -
Vifa6g03406 864 MobiDBLite consensus disorder prediction 418 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03406 Vifa-Chr6 1119484898 1119488872 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03406 17 864 B3 DNA Binding Superfamily AT5G62000 64.376 0.0 1086
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vifa6g03406 AUX_IAA 6.6e-13 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03406 - - gmx:100780892 1355.89