Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03404 ATGATACATTCATATTTCACCTTCGAAGCTCGTAAGCGTTTTGACAAAGCTGCCCTTATATATGACCAGGCACGTGAAAAGTTTATGTCATTGAGAAAAAGCACTAAGATTGATATTGCCACTGTCGTAGAAGAGGAACTGAAGATTGCAAGAACGTCGTTTGAGGAAGCACGATTCAGTCTGGTTGGTGCTCTTAATAACATTGAGGTCAAGAAGAGATTTGAGTTTGTGGAGGTTGTCACTGGAATTATGGACGCCCATCTTCGATACTTTCAACAGGGAAATCACCTACTACAACAAATGGAACCTTTCATTATTGAGGTTTTGGATTATGTACAACAGTCAAAAGAAAGTTTCGATAAGGACCAGCTTTTACTTTTTAAAAGAATGCAAGAACACAAAAAACAAGTTTATCAAGAAAGTAGGCTGTCCTTGAATGGCCCTTACGGTTCTCCTAGTGGAGAATCTGTTCATCCTTTTTCTAGGATATCAAATGAAGTAGTAGATGTAGTAAGCGAATCTGCAGCAAATGGAAAGGTTCAAATCATTCGACAAGGATATCTTTCGAAGCGATCTTCCAATTTGAGAGGTGACTGGAAAAGAAGATATTTTATTCTTGATAGTCGAGGAATGTTGTACTACTACCGCAAACCATGTAGCGTGTCATATGGCAGCAATCAATTATCTCCAAGGAAGAATAGTGTCACGGATAATGGTTCTGGGCTTCTGAGCCGATGGCTTTCTTCTCATTACCATGGGGGCGTCCATGATGAAAAATCTGTAGCACGTCATACAGTAAATCTGCTAACGTCAACAATCAAGGTTGATGCTGATCAGTCAGATTTAAGATTTTGCTTCAGAATAATTTCACCATCGAAGAACTATACATTGCAGGCAGAAAATGCAGTGGACCAGATGGAATGGATGGAAAAGATAAATGGAGTAATTGCCTCCTTGTTGAGTATCCAGACACTAGGATCACCTCTATCAGCTGACTCAGAAAACAGCCACTCTTACTTTACCAATAAGAGTAATGTGCTAGAAAGTTCTCCAGATGATGATCTCACTGAGCTTGAAAAGGCCGCCTCCAAGAATTTCACTCCTAGTAACCATTTACATTCATCTAAAAGTATGCAGTTTCCTAAACACAGTATAAGAAATGAAAAACCTATTGATGTTCTTAGAAAGGTGAGCGGGAATGACAAATGTGCTGATTGTGGTAGACCTGAGCCAGATTGGGCATCTTTAAACCTTGGCATCCTTATATGCATTGAATGCTCTGGTGTTCATCGTAATCTTGGTGTGCATATATCTAAAGTAAGATCACTCACACTTGATGTGAAAGTCTGGGACTACTCTGTTTTAAGTATGTTTGAGTCCCTGGGTAATCATTTTGCAAACTCAGTTTGGGAGGAGCTGTTATGTTTAAGTAGTACTTTGCAAAATGTTGACACCCCTGCTAGTTCATCCAAGGCAAACAAAGACAAGCTATTTCATGCAAGAAAGCCAAAACATGATGATTCTAGTTCATTAAAGGAAAGGTTCATTCACGCAAAGTATGCTGAGAAAATCTTTATTTGCCGGACAGAGAAAAACTCTGCGCAACAGATTTTGAAAAGCATCTGCGCAAATGACAAGAAGGCAGTGTACCAGCACATTGTCAAGTCAGATATGGATATCAATGCCATCAGTAGGCAAGCATTTTCTGGCGTCTCTTTCAACGCGGCTTCTTTGATTAATTCAAAAATATCATCTGAATGCGAGAATCAGTTGATTGAGGACATACAAAATGGTTCTAGTGTGCTTCACCTGGCTTGCCTAGCAAGTGATGCTGGTATGGTGGATCTGCTCCTACAGTATGGGGCAGATATAAACAATTGTGATTCAAGAGGCCGCACACCACTACATTACTGTATTACCAGGGGGAAGCCTGCATCTGCAAAAGTGCTTCTTGTGAGGGGGGCCAATCCAAATGTAGCAGACAAAGAAGGCCACACTCCTCTTAAGCTTGCATCAGAAACCGGCACCTTCTATAGGCATGTATTTCCTGAAAACCATTGGCTAACCCAAACTTTGCCGACCCAAAGTCAAACAGCTTTGCCATTGGTTGGCCTAAAAACCAGTGTTTTTGAAGCAGCTTCCTTCAGAATTGCTTCTCGTAACCGGATTTTAATCAGAAGCTGTCTAACTCTGGGTTCGCAAAGTTCGGGCCACTCAACGGTTTTTAAGATATGGTTCACTCAGATATGTTTTCCAAAGTTGTGGTACGTAACGATGTAA 2280 0.4066 MIHSYFTFEARKRFDKAALIYDQAREKFMSLRKSTKIDIATVVEEELKIARTSFEEARFSLVGALNNIEVKKRFEFVEVVTGIMDAHLRYFQQGNHLLQQMEPFIIEVLDYVQQSKESFDKDQLLLFKRMQEHKKQVYQESRLSLNGPYGSPSGESVHPFSRISNEVVDVVSESAANGKVQIIRQGYLSKRSSNLRGDWKRRYFILDSRGMLYYYRKPCSVSYGSNQLSPRKNSVTDNGSGLLSRWLSSHYHGGVHDEKSVARHTVNLLTSTIKVDADQSDLRFCFRIISPSKNYTLQAENAVDQMEWMEKINGVIASLLSIQTLGSPLSADSENSHSYFTNKSNVLESSPDDDLTELEKAASKNFTPSNHLHSSKSMQFPKHSIRNEKPIDVLRKVSGNDKCADCGRPEPDWASLNLGILICIECSGVHRNLGVHISKVRSLTLDVKVWDYSVLSMFESLGNHFANSVWEELLCLSSTLQNVDTPASSSKANKDKLFHARKPKHDDSSSLKERFIHAKYAEKIFICRTEKNSAQQILKSICANDKKAVYQHIVKSDMDINAISRQAFSGVSFNAASLINSKISSECENQLIEDIQNGSSVLHLACLASDAGMVDLLLQYGADINNCDSRGRTPLHYCITRGKPASAKVLLVRGANPNVADKEGHTPLKLASETGTFYRHVFPENHWLTQTLPTQSQTALPLVGLKTSVFEAASFRIASRNRILIRSCLTLGSQSSGHSTVFKIWFTQICFPKLWYVTM 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03404 759 Pfam Ankyrin repeats (many copies) 599 651 IPR002110 GO:0005515
Vifa6g03404 759 ProSiteProfiles Ankyrin repeat profile. 630 662 IPR002110 GO:0005515
Vifa6g03404 759 CDD ArfGap 391 520 - -
Vifa6g03404 759 ProSiteProfiles Ankyrin repeat region circular profile. 597 625 - -
Vifa6g03404 759 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 370 536 - -
Vifa6g03404 759 SUPERFAMILY PH domain-like 92 316 - -
Vifa6g03404 759 CDD PH_ACAP 184 321 - -
Vifa6g03404 759 PANTHER CENTAURIN/ARF 7 677 IPR045258 GO:0005096
Vifa6g03404 759 SUPERFAMILY ArfGap/RecO-like zinc finger 387 527 IPR037278 -
Vifa6g03404 759 Gene3D Arfaptin homology (AH) domain/BAR domain 6 139 IPR027267 -
Vifa6g03404 759 Pfam PH domain 183 316 IPR001849 -
Vifa6g03404 759 SMART PH_update 182 319 IPR001849 -
Vifa6g03404 759 ProSiteProfiles Ankyrin repeat region circular profile. 630 662 - -
Vifa6g03404 759 SMART arf_gap_3 388 534 IPR001164 GO:0005096
Vifa6g03404 759 Pfam Putative GTPase activating protein for Arf 391 526 IPR001164 GO:0005096
Vifa6g03404 759 Pfam BAR domain of APPL family 9 121 IPR004148 GO:0005515|GO:0005737
Vifa6g03404 759 SUPERFAMILY Ankyrin repeat 538 675 IPR036770 -
Vifa6g03404 759 Gene3D Arf GTPase activating protein 369 530 IPR038508 -
Vifa6g03404 759 ProSiteProfiles PH domain profile. 181 317 IPR001849 -
Vifa6g03404 759 SUPERFAMILY BAR/IMD domain-like 9 204 IPR027267 -
Vifa6g03404 759 Gene3D - 174 325 IPR011993 -
Vifa6g03404 759 Gene3D - 531 679 IPR036770 -
Vifa6g03404 759 ProSiteProfiles Ankyrin repeat profile. 597 629 IPR002110 GO:0005515
Vifa6g03404 759 SMART ANK_2a 630 659 IPR002110 GO:0005515
Vifa6g03404 759 SMART ANK_2a 597 626 IPR002110 GO:0005515
Vifa6g03404 759 ProSiteProfiles ARF GTPase-activating proteins domain profile. 388 536 IPR001164 GO:0005096
Vifa6g03404 759 PRINTS HIV Rev interacting protein signature 442 463 IPR001164 GO:0005096
Vifa6g03404 759 PRINTS HIV Rev interacting protein signature 400 419 IPR001164 GO:0005096
Vifa6g03404 759 PRINTS HIV Rev interacting protein signature 419 436 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03404 Vifa-Chr6 1117012730 1117041325 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03404 398 526 C2H2 Transcription Factor Family AT4G21160 43.846 2.64e-22 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03404 K12489 - gmx:100792517 1016.53