Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03396 ATGCCTTTTCAAGTGATGGATCAGAGGGGTGATAATTTTTTTGATGATATTTCATTTCATTCTGAGAGGAACGTTGGATTGAGGAAGCCGAAATACATGAATCTCCAACACCCCCAAGGAATGAGTGGAATGGTAGCACCACCCGGCAACACTTTGAATGCTTCATCGCCCTTTGAAGTAAACGCAAAATCTGGATTTCCGATGTCACAGACTAATAATCTATCCGAGGGAAGTGTAGAACAAGGCATTGCTGATGTATTGAAAGGTTCCAAGGAATCATTTCATTACAATCCTCAATCATGGGGTGATGTTCTTAGGCAGTCAGCACCGACCTCACATCGTTTAATTGGGAACAAGCTTGTCGCGAATAATGCTGTCCATCGAGAAAGTAGTTTGTTCTCAAGCTCACTGTCGGATATGTTTACCAAAAACTTGAATTTATTGGGGAACGATCTTCTGTCTGACCAGCCAAATGCTTCCGGTTCCCTTCTGGAGGAAGAGCCGTATAAATCTCTTGAAGAGATGGAGGCTCATTATATACATAATCTCCTTCCTGATGAAGATGATCTATTTTCTGGCGTTGTTGATGAGTTAGAATACAATTCTCACACTAGGACAAATGATGATTCCGAAGATTTTGATCTGTTTAGCAGCGGCGGAGGCTTGGAGCTGGAAGGAGATGAACACTTAAATTCGCTTAAAAGAGCAGCTGGTTTGGATGGAGATAACAGTTTCTTTGGAGGTTCTAAAGGAAAACTTCCTTTTGTTGAACAGCCTTCAAGAACACTTTTTGTTCGAAACATCAATAGCAACGTTGAAGATTTTGAGCTGAAGACTCTATTTGAGCAATACGGAGATATCAGAACTATTTATGCGGCTTGCAAGCATCGTGGATTTGTCATGATTTCTTATTTTGATCTAAGGTCTGCACAGAAAGCAATGCAAGCCCTTCAAAATAGGCCATTGAGGTCTAGGAAGCTGGACATACATTATTCGATTCCAAAGGTTAATGCTCCGGAGAAGGATATTGGCCATGGTACACTCATGTTATCTGGTCTTGATTCATCTGTTTTAAATGATGAGCTCAAACATATCTTTGGATTTTACGGAGAAATCAAAGAAATCTATGAATATCAAGAAATGAAGCATCTCAAGTTTATTGAGTTTTATGACGTGCGAGCGGCTGAAGCTGCACTTCGGGCATTGAACCGGATTGAATTTGCTGGGAAGCAGATCAAGCTTGAACCTGGCCATCCTAGTCTGATGCAGCAATCTCACAAGGTGCAAGATGAACGAGATCTTGGTCAGAGCCTTATTGACAACTTACAGCTGCGACAAAAGCCAACACTGTCGTCTGGAGTAATTGATTCTGCTGGCATGGAAAATGGATACAACCAGAGATTTCAATCTGCAATTCGGCAACAGCCTTTGAATGGATTTACTGATAGTGCCTTCTTTCATGCCAATTCCAATGTTCAAAACGCTTTCAGAGGGGCATCTGTTGGAAAAGTTTCTGGTGTTTCCGAGTCCACTAACCTTGTCGATGCAATGAAATTTGCGTCCAGTCCAACAGCGTTTCATCCTCATTCTCTACCAGAGTATCATGCTAGCTTGTCTAATGCTAGTCCTTATAACTTTTCAAGCACCATTGGCAGCAAGGCTGGTAATATAGGCATTGGAGTGACAGAAGCTAATGGAAGGCATATCCAAGGATTAAGCTCAGTTGGGAACTTATCAGAATTCAATGGAGGAGGAAACGGCATCCGCGCGCATCATGGGTTAAATCATATGTGGAGCAGCTCCAATTCGCATCTGCAATCTTCACCAAGTAACATGCCTTGGCAGAAAACCCCGCCATTTGCTAACGGTTCTCCAGGCTTGCCTCAGATGTCAAGCTTTGCTAGAACACCGCCTCATATGCTGAGGACACAACATTTGGACCATCATGTTGGATCGGCACCGGTTGTTACAGCCTCTCCTTGGGACAGGAAAAACTCTTACATGGGAGAATCTCCTGAGGCTTCTGGTTTTCACTTGGGTTCTCCTGGAAATGGAGGTTTTCATGGTTCTTGGCAAATGCGTTCGATGGACTTTTCTCCTCATAATAACATGTTTTCACATGTTGGCGGGAATGGTACTGAACTATCGTCCAGTGCTGGGCAGAGCTCGCCTAATCCGTTGTCACATATTCTCTACGGGAGACAACTTCCTTCAACTACAGTGTCGAAGTTTGATCCTACCAATGATCGAATGAGAAATGTTTATAGTCGTAAAAGTGAAGCAAACACCGTAAGCCTGGCTGAAAGGAAACAATATGAACTTGATCTCGGCCGCATACTGCGTGGAGAAGACACCCGAACAACGCTTATGATAAAAAATATTCCCAACAAGTATACTTCAAAGATGCTACTTGTTGCCATAGATGAGCAATGTCGTGGAACTTACGACTTTCTGTATTTACCAATTGACTTCAAGAACAAATGTAATGTTGGATATGCATTCATAAATATGACCGATCCTGCTCAAATCATTCCTTTCCACCAGGCTTTCCACGGTAAAAAGTGGGAGAAGTTCAACAGCGAAAAAGTAGCATCACTTGCATATGCTCGAATTCAAGGAAGAGCTTCTCTTGTTGCTCATTTCCAGAATTCAAGCCTGATGAATGAAGATAAACGTTGCCGTCCTATTCTCTTCCAAACAGAAGGCCCAAATGCTGGCGATATGGAGCCTTTCCCCATTGGAGCCAACGTTAGAGTTCGACCTGGAAAAATTCGCAATGCTGGCAACGAAGAGAATCGCGTCCAAGCTCCTCCTTCAACTCTAGCAACCGGAGAAGAGTCTTCAAACGGAAGCTCCGACTGA 2862 0.4305 MPFQVMDQRGDNFFDDISFHSERNVGLRKPKYMNLQHPQGMSGMVAPPGNTLNASSPFEVNAKSGFPMSQTNNLSEGSVEQGIADVLKGSKESFHYNPQSWGDVLRQSAPTSHRLIGNKLVANNAVHRESSLFSSSLSDMFTKNLNLLGNDLLSDQPNASGSLLEEEPYKSLEEMEAHYIHNLLPDEDDLFSGVVDELEYNSHTRTNDDSEDFDLFSSGGGLELEGDEHLNSLKRAAGLDGDNSFFGGSKGKLPFVEQPSRTLFVRNINSNVEDFELKTLFEQYGDIRTIYAACKHRGFVMISYFDLRSAQKAMQALQNRPLRSRKLDIHYSIPKVNAPEKDIGHGTLMLSGLDSSVLNDELKHIFGFYGEIKEIYEYQEMKHLKFIEFYDVRAAEAALRALNRIEFAGKQIKLEPGHPSLMQQSHKVQDERDLGQSLIDNLQLRQKPTLSSGVIDSAGMENGYNQRFQSAIRQQPLNGFTDSAFFHANSNVQNAFRGASVGKVSGVSESTNLVDAMKFASSPTAFHPHSLPEYHASLSNASPYNFSSTIGSKAGNIGIGVTEANGRHIQGLSSVGNLSEFNGGGNGIRAHHGLNHMWSSSNSHLQSSPSNMPWQKTPPFANGSPGLPQMSSFARTPPHMLRTQHLDHHVGSAPVVTASPWDRKNSYMGESPEASGFHLGSPGNGGFHGSWQMRSMDFSPHNNMFSHVGGNGTELSSSAGQSSPNPLSHILYGRQLPSTTVSKFDPTNDRMRNVYSRKSEANTVSLAERKQYELDLGRILRGEDTRTTLMIKNIPNKYTSKMLLVAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMTDPAQIIPFHQAFHGKKWEKFNSEKVASLAYARIQGRASLVAHFQNSSLMNEDKRCRPILFQTEGPNAGDMEPFPIGANVRVRPGKIRNAGNEENRVQAPPSTLATGEESSNGSSD 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03396 953 Gene3D - 345 438 IPR012677 -
Vifa6g03396 953 SUPERFAMILY RNA-binding domain, RBD 258 417 IPR035979 GO:0003676
Vifa6g03396 953 SMART rrm1_1 788 864 IPR000504 GO:0003723
Vifa6g03396 953 SMART rrm1_1 347 415 IPR000504 GO:0003723
Vifa6g03396 953 SMART rrm1_1 262 330 IPR000504 GO:0003723
Vifa6g03396 953 MobiDBLite consensus disorder prediction 923 953 - -
Vifa6g03396 953 PANTHER RNA RECOGNITION MOTIF-CONTAINING 65 931 - -
Vifa6g03396 953 SUPERFAMILY RNA-binding domain, RBD 788 872 IPR035979 GO:0003676
Vifa6g03396 953 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 263 327 IPR000504 GO:0003723
Vifa6g03396 953 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 348 413 IPR000504 GO:0003723
Vifa6g03396 953 CDD RRM3_MEI2_like 789 874 IPR034454 -
Vifa6g03396 953 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 261 334 IPR000504 GO:0003723
Vifa6g03396 953 FunFam Protein MEI2-like 1 345 438 - -
Vifa6g03396 953 Pfam RNA recognition motif 2 786 882 IPR007201 -
Vifa6g03396 953 MobiDBLite consensus disorder prediction 932 953 - -
Vifa6g03396 953 Gene3D - 255 344 IPR012677 -
Vifa6g03396 953 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 346 419 IPR000504 GO:0003723
Vifa6g03396 953 CDD RRM1_MEI2_like 260 335 IPR034453 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03396 Vifa-Chr6 1114257967 1114262542 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03396 258 412 Eukaryotic Initiation Factors Gene Family AT3G16380 27.273 7.90e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03396 - - gmx:100797893 1335.47