Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03394 ATGCCTTTTCAAGTGATGGATCAGAGGGGTGATAATTTTTTTGATGATATTTCATTTCATTCTGAGAGGAACGTTGGATTGAGGAAGCCGAAATACATGAATCTCCAACACCCCCAAGGAATGAGTGGAATGGTAGCACCACCCGGCAACACTTTGAATGCTTCATCGCCCTTTGAAGTAAACGCAAAATCTGGATTTCCGATGTCACAGACTAATAATCTATCCGAGGGAAGTGTAGAACAAGGCATTGCTGATGTATTGAAAGGTTCCAAGGAATCATTTCATTACAATCCTCAATCATGGGGTGATGTTCTTAGGCAGTCAGCACCGACCTCACATCGTTTAATTGGGAACAAGCTTGTCGCGAATAATGCTGTCCATCGAGAAAGTAGTTTGTTCTCAAGCTCACTGTCGGATATGTTTACCAAAAACTTGAATTTATTGGGGAACGATCTTCTGTCTGACCAGCCAAATGCTTCCGGTTCCCTTCTGGAGGAAGAGCCGTATAAATCTCTTGAAGAGATGGAGGCTCATTATATACATAATCTCCTTCCTGATGAAGATGATCTATTTTCTGGCGTTGTTGATGAGTTAGAATACAATTCTCACACTAGGACAAATGATGATTCCGAAGATTTTGATCTGTTTAGCAGCGGCGGAGGCTTGGAGCTGGAAGGAGATGAACACTTAAATTCGCTTAAAAGAGCAGCTGGTTTGGATGGAGATAACAGTTTCTTTGGAGGTTCTAAAGGAAAACTTCCTTTTGTTGAACAGCCTTCAAGAACACTTTTTGTTCGAAACATCAATAGCAACGTTGAAGATTTTGAGCTGAAGACTCTATTTGAGCAATACGGAGATATCAGAACTATTTATGCGGCTTGCAAGCATCGTGGATTTGTCATGATTTCTTATTTTGATCTAAGGTCTGCACAGAAAGCAATGCAAGCCCTTCAAAATAGGCCATTGAGGTCTAGGAAGCTGGACATACATTATTCGATTCCAAAGGTTAATGCTCCGGAGAAGGATATTGGCCATGGTACACTCATGTTATCTGGTCTTGATTCATCTGTTTTAAATGATGAGCTCAAACATATCTTTGGATTTTACGGAGAAATCAAAGAAATCTATGAATATCAAGAAATGAAGCATCTCAAGTTTATTGAGTTTTATGACGTGCGAGCGGCTGAAGCTGCACTTCGGGCATTGAACCGGATTGAATTTGCTGGGAAGCAGATCAAGCTTGAACCTGGCCATCCTAGGTTTGCAACACGTCTGATGCAGCAATCTCACAAGGTGCAAGATGAACGAGATCTTGGTCAGAGCCTTATTGACAACTTACAGCTGCGACAAAAGCCAACACTGTCGTCTGGAGTAATTGATTCTGCTGGCATGGAAAATGGATACAACCAGAGATTTCAATCTGCAATTCGGCAACAGCCTTTGAATGGATTTACTGATAGTGCCTTCTTTCATGCCAATTCCAATGTTCAAAACGCTTTCAGAGGGGCATCTGTTGGAAAAGTTTCTGGTGTTTCCGAGTCCACTAACCTTGTCGATGCAATGAAATTTGCGTCCAGTCCAACAGCGTTTCATCCTCATTCTCTACCAGAGTATCATGCTAGCTTGTCTAATGCTAGTCCTTATAACTTTTCAAGCACCATTGGCAGCAAGGCTGGTAATATAGGCATTGGAGTGACAGAAGCTAATGGAAGGCATATCCAAGGATTAAGCTCAGTTGGGAACTTATCAGAATTCAATGGAGGAGGGTCATCAGGAAACGGCATCCGCGCGCATCATGGGTTAAATCATATGTGGAGCAGCTCCAATTCGCATCTGCAATCTTCACCAAGTAACATGCCTTGGCAGAAAACCCCGCCATTTGCTAACGGTTCTCCAGGCTTGCCTCAGATGTCAAGCTTTGCTAGAACACCGCCTCATATGCTGAGGACACAACATTTGGACCATCATGTTGGATCGGCACCGGTTGTTACAGCCTCTCCTTGGGACAGGAAAAACTCTTACATGGGAGAATCTCCTGAGGCTTCTGGTTTTCACTTGGGTTCTCCTGGAAATGGAGGTTTTCATGGTTCTTGGCAAATGCGTTCGATGGACTTTTCTCCTCATAATAACATGTTTTCACATGTTGGCGGGAATGGTACTGAACTATCGTCCAGTGCTGGGCAGAGCTCGCCTAATCCGTTGTCACATATTCTCTACGGGAGACAACTTCCTTCAACTACAGTGTCGAAGTTTGATCCTACCAATGATCGAATGAGAAATGTTTATAGTCGTAAAAGTGAAGCAAACACCGTAAGCCTGGCTGAAAGGAAACAATATGAACTTGATCTCGGCCGCATACTGCGTGGAGAAGACACCCGAACAACGCTTATGATAAAAAATATTCCCAACAAGTATACTTCAAAGATGCTACTTGTTGCCATAGATGAGCAATGTCGTGGAACTTACGACTTTCTGTATTTACCAATTGACTTCAAGAACAAATGTAATGTTGGATATGCATTCATAAATATGACCGATCCTGCTCAAATCATTCCTTTCCACCAGGCTTTCCACGGTAAAAAGTGGGAGAAGTTCAACAGCGAAAAAGTAGCATCACTTGCATATGCTCGAATTCAAGGAAGAGCTTCTCTTGTTGCTCATTTCCAGAATTCAAGCCTGATGAATGAAGATAAACGTTGCCGTCCTATTCTCTTCCAAACAGAAGGCCCAAATGCTGGCGATATGGAGCCTTTCCCCATTGGAGCCAACGTTAGAGTTCGACCTGGAAAAATTCGCAATGCTGGCAACGAAGAGAATCGCGTCCAAGCTCCTCCTTCAACTCTAGCAACCGGAGAAGAGTCTTCAAACGGAAGCTCCGACTGA 2883 0.4311 MPFQVMDQRGDNFFDDISFHSERNVGLRKPKYMNLQHPQGMSGMVAPPGNTLNASSPFEVNAKSGFPMSQTNNLSEGSVEQGIADVLKGSKESFHYNPQSWGDVLRQSAPTSHRLIGNKLVANNAVHRESSLFSSSLSDMFTKNLNLLGNDLLSDQPNASGSLLEEEPYKSLEEMEAHYIHNLLPDEDDLFSGVVDELEYNSHTRTNDDSEDFDLFSSGGGLELEGDEHLNSLKRAAGLDGDNSFFGGSKGKLPFVEQPSRTLFVRNINSNVEDFELKTLFEQYGDIRTIYAACKHRGFVMISYFDLRSAQKAMQALQNRPLRSRKLDIHYSIPKVNAPEKDIGHGTLMLSGLDSSVLNDELKHIFGFYGEIKEIYEYQEMKHLKFIEFYDVRAAEAALRALNRIEFAGKQIKLEPGHPRFATRLMQQSHKVQDERDLGQSLIDNLQLRQKPTLSSGVIDSAGMENGYNQRFQSAIRQQPLNGFTDSAFFHANSNVQNAFRGASVGKVSGVSESTNLVDAMKFASSPTAFHPHSLPEYHASLSNASPYNFSSTIGSKAGNIGIGVTEANGRHIQGLSSVGNLSEFNGGGSSGNGIRAHHGLNHMWSSSNSHLQSSPSNMPWQKTPPFANGSPGLPQMSSFARTPPHMLRTQHLDHHVGSAPVVTASPWDRKNSYMGESPEASGFHLGSPGNGGFHGSWQMRSMDFSPHNNMFSHVGGNGTELSSSAGQSSPNPLSHILYGRQLPSTTVSKFDPTNDRMRNVYSRKSEANTVSLAERKQYELDLGRILRGEDTRTTLMIKNIPNKYTSKMLLVAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMTDPAQIIPFHQAFHGKKWEKFNSEKVASLAYARIQGRASLVAHFQNSSLMNEDKRCRPILFQTEGPNAGDMEPFPIGANVRVRPGKIRNAGNEENRVQAPPSTLATGEESSNGSSD 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03394 960 FunFam Protein MEI2-like 1 345 439 - -
Vifa6g03394 960 Pfam RNA recognition motif 2 793 889 IPR007201 -
Vifa6g03394 960 CDD RRM3_MEI2_like 796 881 IPR034454 -
Vifa6g03394 960 SUPERFAMILY RNA-binding domain, RBD 795 879 IPR035979 GO:0003676
Vifa6g03394 960 Gene3D - 345 441 IPR012677 -
Vifa6g03394 960 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 348 413 IPR000504 GO:0003723
Vifa6g03394 960 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 263 327 IPR000504 GO:0003723
Vifa6g03394 960 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 261 334 IPR000504 GO:0003723
Vifa6g03394 960 MobiDBLite consensus disorder prediction 930 960 - -
Vifa6g03394 960 SUPERFAMILY RNA-binding domain, RBD 258 417 IPR035979 GO:0003676
Vifa6g03394 960 PANTHER RNA RECOGNITION MOTIF-CONTAINING 65 938 - -
Vifa6g03394 960 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 346 419 IPR000504 GO:0003723
Vifa6g03394 960 CDD RRM1_MEI2_like 260 335 IPR034453 -
Vifa6g03394 960 SMART rrm1_1 347 415 IPR000504 GO:0003723
Vifa6g03394 960 SMART rrm1_1 262 330 IPR000504 GO:0003723
Vifa6g03394 960 SMART rrm1_1 795 871 IPR000504 GO:0003723
Vifa6g03394 960 MobiDBLite consensus disorder prediction 939 960 - -
Vifa6g03394 960 Gene3D - 255 344 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03394 Vifa-Chr6 1114257967 1114262542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03394 258 412 Eukaryotic Initiation Factors Gene Family AT3G16380 27.273 8.48e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03394 - - gmx:100797893 1325.46