Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03357 ATGGACGAAATAGGAGAATCCTCTGCTTCAGCCAAACCCTCAGATGAAATCTGGGCCAAGCTTGTTCAGTTAGACTCGAGATACTCAGATATTGAGATAAGGTCAGATGAATGCGAAATATGTTCCGAGATATTAGCTACTTCTAGTGATAAGCATAGCTGGTGCAAAATAGTAAGGAACTCTGATCTATGTTCTGCTACTATAGAAAATAAGAGTTCAAATACAATACTAGTTGATGGGGCTGAGTTGCGCAATGGTGACAATGTTGTTATAAAAGATGGAAGTGAAATAATCTCAGGCCCTGATAGAGAAGGATTTGTCAACTACAGATTCCAAATCACGTCTAGCCCAAAAACCTGCCAGAATCTGCTAAAGATAACTATAGATGTTGATCATGCAAAGTGTAGTATTTGCTTAAACCTATGGCATGATGTCGTGACTGTTGCTCCATGCCTTCATAATTTTTGCAATGGTTGCTTCTCACAATGGTTAAGGAGATCGCAGGAAAATCATTCGACTGTACTTTGTCCTCAATGTAGAGCAGTTATTCATCTCGCTGGAAAAAATCACTTTTTGCGCACCATTGCAGAGGATATGGTGAGAGCTGATTCTTCCCTAAGACGCTCACTGGACGAAACCACGGTTTTAGATACATATGCATATGTACGATCAAACCTTCTCATTGGATATGTAAAGAATGGTCGAAAGAGGGCCAACACAACAACGATTGATCAAAACGATGGCACAGATCATCATTGCCCACAGTGTGTTGCTGATGTTGGTGGGTTTCGATGCAACCGCAACACTATTCATCTCCAATGTCAAGCATGTGGAGGAATGATGCCTTCTCGTAACGGCCTCCGTGTTCCTCAATATTGCTTAGGATGTGACAGACCATTTTGCGGAGCTTACTGGAATGATCAAGGGGTAACCAGGAGTAGCTCATACCCTGTGTGTTCCCGGGATATTTTAAAACCTATCTCAGAACACACTATCACAGGAATTCCTTCGTTAACCCATGAAAAGAATCTGCACGAACAGAGTATCACTGAAAGTTGCATAAGATTAATGGGGAGGACATTGCAGGATGTAATATCAGAATGGATAATAAAACTGAATAACAATGAAATTGATACAACACGAATGATGCTGAATCACGCAGAGATGATGACAGCTGGGACTTTAGTATGCCGTGATTGTTATGAGAAGTTGGTGTCATTTCTCTTATACTGGTTTCGCATCTCTATACCCAAAAATCTTCTCCCACCAGAAGCATCGGCAAGAGAAGATTGCTGGTATGGATACGCATGTCGGACACAGCACCGTAGCGAAGAGCATGCTCGGAAAAGGAATCATGTTTGCCGTCCAACCAGAGGTGCTTTCTGA 1386 0.4192 MDEIGESSASAKPSDEIWAKLVQLDSRYSDIEIRSDECEICSEILATSSDKHSWCKIVRNSDLCSATIENKSSNTILVDGAELRNGDNVVIKDGSEIISGPDREGFVNYRFQITSSPKTCQNLLKITIDVDHAKCSICLNLWHDVVTVAPCLHNFCNGCFSQWLRRSQENHSTVLCPQCRAVIHLAGKNHFLRTIAEDMVRADSSLRRSLDETTVLDTYAYVRSNLLIGYVKNGRKRANTTTIDQNDGTDHHCPQCVADVGGFRCNRNTIHLQCQACGGMMPSRNGLRVPQYCLGCDRPFCGAYWNDQGVTRSSSYPVCSRDILKPISEHTITGIPSLTHEKNLHEQSITESCIRLMGRTLQDVISEWIIKLNNNEIDTTRMMLNHAEMMTAGTLVCRDCYEKLVSFLLYWFRISIPKNLLPPEASAREDCWYGYACRTQHRSEEHARKRNHVCRPTRGAF 461
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03357 461 Gene3D - 221 310 - -
Vifa6g03357 461 Pfam Cysteine rich domain with multizinc binding regions 253 416 IPR040909 -
Vifa6g03357 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 205 IPR013083 -
Vifa6g03357 461 Gene3D - 2 127 - -
Vifa6g03357 461 ProSiteProfiles Zinc finger RING-type profile. 135 180 IPR001841 -
Vifa6g03357 461 Pfam Ring finger domain 134 180 IPR001841 -
Vifa6g03357 461 PANTHER UBIQUITIN LIGASE PROTEIN CHFR 12 459 - -
Vifa6g03357 461 SUPERFAMILY RING/U-box 130 185 - -
Vifa6g03357 461 SMART ring_2 135 179 IPR001841 -
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03357 121 180 C3H Transcription Factor Family AT1G14200 37.879 6.61e-06 44.7
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03357 K10644 - gmx:100805618 730.709
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03357 6 1104252737 1104255917 Vifa6g03357 6 1104252737 1104255917 ECH