Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03355 ATGGCTAGATCTCCCTGCTGTGAAAAACAACACACTAATAAAGGCGCTTGGTCTAAGGAAGAAGATGAACGGTTAATAAAATACATCAAGTCTCACGGTGAAGGTTGCTGGCGTTCTCTTCCTAAAGCCGCTGGCTTGGCTCGTTGCGGCAAAAGTTGCAGACTTAGATGGATAAATTACCTCCGACCTGATCTCAAGCGAGGTAACTTCACTCGCGAAGAAGATGAACTTATCATTCGTCTCCACAACGAAGTTGGTAATAAATGGTCTCAAATTGCTCAACAATTGAAAGGAAGAACAGACAATGAGATCAAGAATTACTGGAATACACACATCAAGCGTAAACTCTACGGACGTGGAGTTGATCCTTCAACGCATAAACCACTCAAACCCACCACCGCCATCACCTCCGCCGCTGCTGGTGCTAGTGCTAGTGCTGCTACTTCCTCGACAACCACCGCCTCCGCGGTTGCTTCTCCAACAAATCTTATCAACAAACCTGCTCTGATTCCCGTGGTCCCCACTAGCAGTGGCAGTAGCGTTAGCCACAAGAGCTTGAACATGAAAAGTGTGTTTCCTTTATTCAGTTTCAATGGCGGTTCGAATGAAAAGTTAGTTGTAACTGATTTTGGTTGCGGCGGTCTGGAAAAAAAGTTAGTTCTAACTGATTCTGGTTGCGGCGGAGTTGAGGATTCATTTTCAAACACTAGCAGTGGTGTAACCTTGGAAGAAACACCTTATCCTCATCAAATCAATTTGGAACTTTCATTGGCTCCACCATTTCAACAGCCACAGTTGCTGTCATCACAAGGTGTGTGTTTTTGTAATCAAGCTTTAGGGTTACGTGGTAACCAACCTTGTTGCTGTATCAATACCAGGGCTATTGATGCTGCTTCTGCGCCTGCTCCACCACCTGCAACCACCGCCACCGGCAATGATTTTTGTAGATTTTTCGGAGCTGGGTTTATCAATTTTTGA 978 0.4519 MARSPCCEKQHTNKGAWSKEEDERLIKYIKSHGEGCWRSLPKAAGLARCGKSCRLRWINYLRPDLKRGNFTREEDELIIRLHNEVGNKWSQIAQQLKGRTDNEIKNYWNTHIKRKLYGRGVDPSTHKPLKPTTAITSAAAGASASAATSSTTTASAVASPTNLINKPALIPVVPTSSGSSVSHKSLNMKSVFPLFSFNGGSNEKLVVTDFGCGGLEKKLVLTDSGCGGVEDSFSNTSSGVTLEETPYPHQINLELSLAPPFQQPQLLSSQGVCFCNQALGLRGNQPCCCINTRAIDAASAPAPPPATTATGNDFCRFFGAGFINF 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03355 325 CDD SANT 69 112 IPR001005 -
Vifa6g03355 325 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vifa6g03355 325 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vifa6g03355 325 CDD SANT 16 61 IPR001005 -
Vifa6g03355 325 SMART sant 13 63 IPR001005 -
Vifa6g03355 325 SMART sant 66 114 IPR001005 -
Vifa6g03355 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vifa6g03355 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vifa6g03355 325 FunFam MYB transcription factor 68 129 - -
Vifa6g03355 325 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vifa6g03355 325 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Vifa6g03355 325 Gene3D - 68 136 - -
Vifa6g03355 325 FunFam MYB-related transcription factor 13 66 - -
Vifa6g03355 325 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 152 - -
Vifa6g03355 325 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vifa6g03355 325 Gene3D - 14 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03355 Vifa-Chr6 1103599405 1103600616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03355 1 160 MYB Transcription Factor Family AT4G38620 69.375 1.25e-80 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa6g03355 Myb_DNA-binding 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03355 K09422 - gmx:100808083 279.641