Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03350 ATGGAGAGGTACGAAGTTGTTAAGGATTTGGGAGCTGGGAATTTTGGAGTGGCGAGACTTTTGAGGAACAAGGAGACTAAGGAGCTTGTTGCCATGAAGTACATCGAGCGTGGCCATAAGATTGATGAGAATGTGGCAAGAGAGATTATCAACCATAGGTCTCTTCGACACCCGAATATAATTCGCTTTAAGGAGGTGGTTTTGACTCCTACTCATTTGGCAATAGTGATGGAGTATGCAGCTGGAGGTGAACTCTTTGAGAGGATATGTAGTGCTGGACGGTTTAGCGAAGACGAGGCTAGATATTTCTTTCAGCAGCTGATATCTGGCGTCCATTACTGTCATGCTATGCAAATATGTCATAGAGATTTGAAGCTGGAAAACACACTTTTAGATGGAAGCCCTGCGCCTCGCTTGAAAATTTGTGACTTCGGTTATTCCAAGTCATCTTTGCTTCATTCCCGACCCAAATCAACTGTTGGAACTCCAGCTTATATAGCACCGGAGGTTCTTTCTAGGAGGGAGTATGATGGCAAGTTGGCTGATGTGTGGTCGTGCGGAGTAACCCTTTATGTCATGCTGGTTGGAGCATATCCCTTCGAGGATCAAGATGATCCTAGAAACTTCAGGAAAACAATTCAGCGCATAATGGCCGTTCAATACAAAATCCCTGATTATGTTCACATATCTCAAGATTGCAAACACCTTCTATCTCGTATATTTGTTGCAAATCCATTAAAGAGAATTTCTCTCAGGGAAATCAAAAACCATCCATGGTTTTTAAAGAATCTTCCAAGGGAGCTAACTGAATCAGCTCAAGCTGCATACTACCAGAGAGGAAATCCAAGCTTTTCCATTCAAAGTGTGGACGAGATAATGAAAATTGTGGGAGAGGCGAGGGAACCTCCTCCGGTATCTAGGCCGGTCAAAGGCTTTGGCTGGGAAGGCGAGGAGGAAGAAGAAGAACCGGAAGAAGAGGGGGAGGAAGAGGAAGATGAAGAAGATGAGTATGACAAAAGGGTCAAAGAGGTTCATGCAAGTGCAGAATTTCAAATCAGTTCAGAAGTGTAA 1071 0.4388 MERYEVVKDLGAGNFGVARLLRNKETKELVAMKYIERGHKIDENVAREIINHRSLRHPNIIRFKEVVLTPTHLAIVMEYAAGGELFERICSAGRFSEDEARYFFQQLISGVHYCHAMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQDDPRNFRKTIQRIMAVQYKIPDYVHISQDCKHLLSRIFVANPLKRISLREIKNHPWFLKNLPRELTESAQAAYYQRGNPSFSIQSVDEIMKIVGEAREPPPVSRPVKGFGWEGEEEEEEPEEEGEEEEDEEDEYDKRVKEVHASAEFQISSEV 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03350 356 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g03350 356 PANTHER SERINE/THREONINE KINASE 2 307 - -
Vifa6g03350 356 MobiDBLite consensus disorder prediction 301 356 - -
Vifa6g03350 356 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g03350 356 MobiDBLite consensus disorder prediction 315 337 - -
Vifa6g03350 356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Vifa6g03350 356 CDD STKc_SnRK2 3 259 - -
Vifa6g03350 356 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Vifa6g03350 356 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vifa6g03350 356 Gene3D Transferase(Phosphotransferase) domain 1 80 268 - -
Vifa6g03350 356 FunFam Serine/threonine-protein kinase SRK2A 80 268 - -
Vifa6g03350 356 FunFam Serine/threonine-protein kinase SRK2E 1 79 - -
Vifa6g03350 356 SUPERFAMILY Protein kinase-like (PK-like) 2 291 IPR011009 -
Vifa6g03350 356 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03350 Vifa-Chr6 1099175532 1099178022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03350 3 263 CBL-interacting serine-threonine protein kinases AT2G26980 41.912 4.84e-67 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vifa6g03350 Pkinase 2.2e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03350 K14498 - gmx:547968 648.662