Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03346 ATGGCATCTACAATAGTTCGTAGAAACATCACCAGCCACTTGAAAAAATTACCGTTTTTCTCTTCTTCGCGTTTCAGTAATAACCACTTATTCAACGTTGAACCTTCCACCACCGTTTCCTTTCACTCACAAACCGCTGCCGCCGCCGGCGGTGGTGGTGGATTGCCATCTTACATGCGTGGAGCTGTTTATTGGGAACCTAACAAACCTCTCACCATTGAAGAATTTCACATTCCTCGCCCCAAAGCCGGTGAACTTCTCATCAAAACCAAAGCATGTGGAGTGTGCCACTCTGATCTTCATGTTATGAAAGGTGAAATTCCGTTTACAAGTCCTTGTGTTGTTGGCCATGAGATTACCGGGGAAGTTGTTGAACATGGACAGAACACTGATTCGAAAACCATAGAAAGGCTTCCGGTTGGATCTAGAGTTGTTGGCGCCTTTATCATGCCTTGTGGCAACTGCTCTTATTGTTCAAAGGGCCATGATGATCTTTGTGAAGCTTTCTTTGCTTATAACCGGGCTAAAGGAACCCTCTACGATGGTGAAACTCGATTATTTCTTCGAAGCAGTGGAAAACCGGTATTCATGTATAGCATGGGAGGGCTTGCTGAATACTGTGTTGTGCCAGCAAATGCATTGGCTGTATTACCAAGCTCAATGCCATATACCGAGTCTGCAATTCTAGGATGTGCTGTTTTTACTGCTTATGGTGCTATGGCTCATGCGGCTGAAGTGCGTCCGGGTGATTCTGTTGCTGTTATTGGAACTGGGGGTGTTGGTTCTAGTTGTTTGCAGATTGCTAGAGCATTCGGTGCCTCGGATATAATTGCTGTTGATGTTCAGGATAACAAGCTAGAGAAAGCAAAGACACTCGGTGCTACTCACACTATAAATTCAGCAAAGGAAGATCCCATTGAAAAGATACTTGAAATTACTGGTGGAAAAGGCGTTGACGTTGCTGTTGAAGCCTTGGGATTACCACAGACATTTGCTCAGTGCACACAAAGTGTGAAGGATGGAGGAAAAGCAGTGATGATTGGACTGGCAAAAGCTGGTTCTTTAGGAGAGGTTGATATAAATAGACTTGTTCGCAGAAAGATAAAAGTAATTGGGTCATATGGAGGCAGGGCTAGACAAGATCTTCCAAAGCTAATTAGATTAGCAGACACAGGAATCTTTGACCTTGGTCATGCTGTTACAAAAAAATACACTTTTGAGGAGTCTGGCAAAGCATTCCAGGATCTCAACGAAGGAAAAATCGTCGGCCGAGCTGTAATCGAGATAGTATAA 1293 0.4401 MASTIVRRNITSHLKKLPFFSSSRFSNNHLFNVEPSTTVSFHSQTAAAAGGGGGLPSYMRGAVYWEPNKPLTIEEFHIPRPKAGELLIKTKACGVCHSDLHVMKGEIPFTSPCVVGHEITGEVVEHGQNTDSKTIERLPVGSRVVGAFIMPCGNCSYCSKGHDDLCEAFFAYNRAKGTLYDGETRLFLRSSGKPVFMYSMGGLAEYCVVPANALAVLPSSMPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAVIGTGGVGSSCLQIARAFGASDIIAVDVQDNKLEKAKTLGATHTINSAKEDPIEKILEITGGKGVDVAVEALGLPQTFAQCTQSVKDGGKAVMIGLAKAGSLGEVDINRLVRRKIKVIGSYGGRARQDLPKLIRLADTGIFDLGHAVTKKYTFEESGKAFQDLNEGKIVGRAVIEIV 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03346 430 PANTHER NAD-DEPENDENT ALCOHOL DEHYDROGENASE 58 427 - -
Vifa6g03346 430 CDD Zn_ADH10 59 428 - -
Vifa6g03346 430 Pfam Zinc-binding dehydrogenase 259 389 IPR013149 -
Vifa6g03346 430 FunFam Sorbitol dehydrogenase 236 374 - -
Vifa6g03346 430 Gene3D - 63 419 - -
Vifa6g03346 430 Pfam Alcohol dehydrogenase GroES-like domain 84 214 IPR013154 -
Vifa6g03346 430 Gene3D - 236 373 - -
Vifa6g03346 430 SMART PKS_ER_names_mod 66 427 IPR020843 GO:0016491
Vifa6g03346 430 SUPERFAMILY GroES-like 55 262 IPR011032 -
Vifa6g03346 430 FunFam Alcohol dehydrogenase (Zinc) 63 248 - -
Vifa6g03346 430 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 221 394 IPR036291 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03346 73 348 Monolignol Biosynthesis Gene Families AT4G37970 27.046 3.63e-18 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03346 - - gmx:100775182 740.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03346 6 1097885713 1097888282 Vifa6g03346 6 1097885713 1097888282 ECH