Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03345 ATGAAACCCTTTTCATCGTCACTACAAAATCTCAATCTCTCAAACAACAGATTCACAAACCAGGTTCATCTTTCATCTTTTCAAAACCTTAAAATCCTCGACCTTTCCAACAACAACCTTGCCACGGTTACTTACAAAGAATGTCTCAAGAACCACGCGGCAAACTTAGGTGGTCACGACCTCGACGGCTGCGGCGAATTCATGACATCCCCCACCGCGACATCAGCCGACCCAACATCCTTAAAATGCGCTGCGTGCGGCTGTCACCGAAACTTCTACCGCCATATCCCTCTGTCCAGCAACTTCTCAGTCCAGCTCCGCGTGTGTGAACTGTAA 336 0.4821 MKPFSSSLQNLNLSNNRFTNQVHLSSFQNLKILDLSNNNLATVTYKECLKNHAANLGGHDLDGCGEFMTSPTATSADPTSLKCAACGCHRNFYRHIPLSSNFSVQLRVCEL 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03345 111 Pfam ZF-HD protein dimerisation region 43 95 IPR006456 -
Vifa6g03345 111 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 29 95 - -
Vifa6g03345 111 Gene3D Ribonuclease Inhibitor 2 74 IPR032675 -
Vifa6g03345 111 ProSiteProfiles Leucine-rich repeat profile. 7 28 IPR001611 GO:0005515
Vifa6g03345 111 SUPERFAMILY L domain-like 6 51 - -
Vifa6g03345 111 ProSiteProfiles Leucine-rich repeat profile. 29 50 IPR001611 GO:0005515
Vifa6g03345 111 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 44 95 IPR006456 -
Vifa6g03345 111 PRINTS Leucine-rich repeat signature 27 40 - -
Vifa6g03345 111 PRINTS Leucine-rich repeat signature 8 21 - -
Vifa6g03345 111 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 45 96 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03345 Vifa-Chr6 1097774770 1097775105 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03345 43 97 ZF-HD Transcription Factor Family AT1G69600 83.636 6.96e-30 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vifa6g03345 ZF-HD_dimer 8.2e-26 No_clan