Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03344 ATGCCTCTTTTAAAGAAGAAGTCCTTTGCCTTGACTGAGCCTCCTCAGGATTTGAAGCCAGAGGAGCATGTTTACCAAGTTCGATTTACGAAAGAAATATTTCGAGATTATCCTGGTTATTTGAGCCGTTTGAATTTGTACCGCCAGAGGGTTTGGGCATGTAAAGTCACTGGAAAAACTGGCTTGACTTATGAAGAGGCTTTGGTGTCAGAACAAAGAGCTACTGAAAAATTCCTACAGTTTCCCAAAGAATTTATGACTCCTGCTCTAAAGATCATTCAATTCAGTATGCTCCCTTTGAAGGAACTTGCCGATTCTATTGCTGAAAAACTGCAGGAACGTTTGTTCATTGGTGCGGAACTTTATGGGAAAAAAGATGATGGTCTATGTCCATGCAGAATACTAAAAGTCATCCAGGAAGGAGTCAACAAATATCGATATGAGGTAGCCTGGCTTGACAAAAACAAGAATATTAGTGAAAAAACTGAAATATCTGCAGAAGATTTGGTGCAAAAGAAGCCTCTTTTTAGTAGAAATATTCTGAAGTCTATTATCCGAGAATCTACATACCGAAGTGCCCCTTGGGTGTTACATAACAAACTGGCACAAAATCAAGGTATCTCAACTGAAGTTCCTGAGGAGTTAAGAGGAAAGGTTTTTCTCAAAGACGGACTTATAGTTTGCTCCAAGAAAAGAAATAATGAGGAATCAATGGAGGAAGCTGATAAACTTAAAAAGAAGAAGTTGGACAGGACACTAGTCAATGGTTCTGCACGAGAGAAAGAAAATGTAGAATGCAAGGAGATACCAATCAAATACCCCATTGATGATCTATTGGTGAAGCCTAGTCCAGATGACCCTGTTTTCACTTTACACTTGTGGCCCTACTCTTTGGAAGATTTTGAAAATGCAATCTGCCATAAGGATAGCAATGTGGTTCTCCTTGTGGAATCTCATGCTGCACTTTTTCGAGTTCTTATCAAAGATGATGGTGAATACACTTCAGTGGTTGAGAAACGGAATGTGAAGAAGATAACAATGGTTAACTGGGGAGAATACCTGTGTGATTTTCTAGAAATGATCAATATTCCTCGATTACGGAACTATGAAGCAACCATAAAACGGGGACATTATGGCCTTGTAGATGCCAATGCTAAATTAGAGCTCTTATCCGAGTTGGTCAATCGAGTCCTTGAAACTGCAGTTTTCAGGGAGAAGTTGGATAAGTTAATTGAACAACGCCACGAACTTGGGGCCTCTAAAAGGGAAGAAGCACTAGAACTTGGTAGAAAGAAAAGAGAAAAGAAGGAGAGGTTGAAAGCTGACTCAGAAAGCAACGGGCATCATTTAATAGACAGTGCAGATATCCTAACAAACAATAATCACATTATGCAAAATGGACACATGGAAAAGAAAACAAATGGAGAGATAGAATCATCCATTCAAGACAATTCACTGGGTAGTAGTGGGATTAAGCATTCAAGTCCTGCTTCAGAAAAGACTCCTAAAAATCTGGATTCAGAGCTGAAAGAACCACCAGAAAATGGAAAAGTATCCAAAAAGAAATCATCAAATCCTGCTTCAGAAAAGACTCCTAAAAATCTGGATTCAGAGCTGAAAGAACCACCAGAAAATGGAAAAGTATCCAAAAAGAAATCATCAAAACAGTTGAAGGCGGTTAAGGATTCATCAGACAAGAATAGTGTAGAGCGGAGGAGAGAATACTTTGAACGGGAGATGGAGAAACGAACTATTCGTAGAAGCCCATTAGGTAAAGACCGAGATTACAATAGGTATTGGTGGTTCCGCCGCGATGGAAGGATATTTGTTGAAAGCTGCGACTCCAAGGAGTGGGGATACTACAGCAGCAAGGAAGAGCTTGATGCATTGATGGGTTCACTGAATTGCAAGGGTGAGCGTGAAAGGGAACTGCAAAAACAACTGGAAAAAAGTTATACTAGTATATGTTCAGAACTGCAAAAAAGATCGAATTTGGTGCAGAATAGTGCCATTGACGAGTCTATACTTCGAAGGTCTACTCGTGTTCGAGCTCCACCCAGGGAAAACCCTGCCCATGCTTTCCTCAAATATGTTAACAAGTGGAAAGATGAGTAA 2115 0.3995 MPLLKKKSFALTEPPQDLKPEEHVYQVRFTKEIFRDYPGYLSRLNLYRQRVWACKVTGKTGLTYEEALVSEQRATEKFLQFPKEFMTPALKIIQFSMLPLKELADSIAEKLQERLFIGAELYGKKDDGLCPCRILKVIQEGVNKYRYEVAWLDKNKNISEKTEISAEDLVQKKPLFSRNILKSIIRESTYRSAPWVLHNKLAQNQGISTEVPEELRGKVFLKDGLIVCSKKRNNEESMEEADKLKKKKLDRTLVNGSAREKENVECKEIPIKYPIDDLLVKPSPDDPVFTLHLWPYSLEDFENAICHKDSNVVLLVESHAALFRVLIKDDGEYTSVVEKRNVKKITMVNWGEYLCDFLEMINIPRLRNYEATIKRGHYGLVDANAKLELLSELVNRVLETAVFREKLDKLIEQRHELGASKREEALELGRKKREKKERLKADSESNGHHLIDSADILTNNNHIMQNGHMEKKTNGEIESSIQDNSLGSSGIKHSSPASEKTPKNLDSELKEPPENGKVSKKKSSNPASEKTPKNLDSELKEPPENGKVSKKKSSKQLKAVKDSSDKNSVERRREYFEREMEKRTIRRSPLGKDRDYNRYWWFRRDGRIFVESCDSKEWGYYSSKEELDALMGSLNCKGERERELQKQLEKSYTSICSELQKRSNLVQNSAIDESILRRSTRVRAPPRENPAHAFLKYVNKWKDE 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03344 704 MobiDBLite consensus disorder prediction 480 569 - -
Vifa6g03344 704 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 585 651 IPR028941 -
Vifa6g03344 704 MobiDBLite consensus disorder prediction 503 569 - -
Vifa6g03344 704 Pfam ATP-utilising chromatin assembly and remodelling N-terminal 24 120 IPR013136 -
Vifa6g03344 704 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 290 702 - -
Vifa6g03344 704 MobiDBLite consensus disorder prediction 428 454 - -
Vifa6g03344 704 ProSiteProfiles WAC domain profile. 22 127 IPR013136 -
Vifa6g03344 704 MobiDBLite consensus disorder prediction 480 502 - -
Vifa6g03344 704 MobiDBLite consensus disorder prediction 428 449 - -
Vifa6g03344 704 Pfam DDT domain 290 329 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03344 Vifa-Chr6 1096763349 1096771710 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03344 573 671 Homeobox Transcription Factor Family AT5G44180 37.963 2.14e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Vifa6g03344 WAC_Acf1_DNA_bd 3.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03344 - - var:108323886 951.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03344 6 1096763349 1096771710 Vifa6g03344 6 1096763349 1096771710 ECH