Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03343 ATGCCTCTTTTAAAGAAGAAGTCCTTTGCCTTGACTGAGCCTCCTCAGGATTTGAAGCCAGAGGAGCATGTTTACCAAGTTCGATTTACGAAAGAAATATTTCGAGATTATCCTGGTTATTTGAGCCGTTTGAATTTGTACCGCCAGAGGGTTTGGGCATGTAAAGTCACTGGAAAAACTGGCTTGACTTATGAAGAGGCTTTGGTGTCAGAACAAAGAGCTACTGAAAAATTCCTACAGTTTCCCAAAGAATTTATGACTCCTGCTCTAAAGATCATTCAATTCAGTATGCTCCCTTTGAAGGAACTTGCCGATTCTATTGCTGAAAAACTGCAGGAACGTTTGTTCATTGGTGCGGAACTTTATGGGAAAAAAGATGATGGTCTATGTCCATGCAGAATACTAAAAGTCATCCAGGAAGGAGTCAACAAATATCGATATGAGGTAGCCTGGCTTGACAAAAACAAGAATATTAGTGAAAAAACTGAAATATCTGCAGAAGATTTGGTGCAAAAGAAGCCTCTTTTTAGTAGAAATATTCTGAAGTCTATTATCCGAGAATCTACATACCGAAGTGCCCCTTGGGTGTTACATAACAAACTGGCACAAAATCAAGGTATCTCAACTGAAGTTCCTGAGGAGTTAAGAGGAAAGGTTTTTCTCAAAGACGGACTTATAGTTTGCTCCAAGAAAAGAAATAATGAGGAATCAATGGAGGAAGCTGATAAACTTAAAAAGAAGAAGTTGGACAGGACACTAGTCAATGGTTCTGCACGAGAGAAAGAAAATGTAGAATGCAAGGAGATACCAATCAAATACCCCATTGATGATCTATTGGTGAAGCCTAGTCCAGATGACCCTGTTTTCACTGTCCGTCCTCCTCCGTCAAGAGACTTCAATGTTCCAATTCATTGTGTAGGGGATCTCTTAATGGTTTGGGATTTTTGTACTTCTTTTGGTAAACAGTTACACTTGTGGCCCTACTCTTTGGAAGATTTTGAAAATGCAATCTGCCATAAGGATAGCAATGTGGTTCTCCTTGTGGAATCTCATGCTGCACTTTTTCGAGTTCTTATCAAAGATGATGGTGAATACACTTCAGTGGTTGAGAAACGGAATGTGAAGAAGATAACAATGGTTAACTGGGGAGAATACCTGTGTGATTTTCTAGAAATGATCAATATTCCTCGATTACGGAACTATGAAGCAACCATAAAACGGGGACATTATGGCCTTGTAGATGCCAATGCTAAATTAGAGCTCTTATCCGAGTTGGTCAATCGAGTCCTTGAAACTGCAGTTTTCAGGGAGAAGTTGGATAAGTTAATTGAACAACGCCACGAACTTGGGGCCTCTAAAAGGGAAGAAGCACTAGAACTTGGTAGAAAGAAAAGAGAAAAGAAGGAGAGGTTGAAAGCTGACTCAGAAAGCAACGGGCATCATTTAATAGACAGTGCAGATATCCTAACAAACAATAATCACATTATGCAAAATGGACACATGGAAAAGAAAACAAATGGAGAGATAGAATCATCCATTCAAGACAATTCACTGGGTAGTAGTGGGATTAAGCATTCAAGTCCTGCTTCAGAAAAGACTCCTAAAAATCTGGATTCAGAGCTGAAAGAACCACCAGAAAATGGAAAAGTATCCAAAAAGAAATCATCAAATCCTGCTTCAGAAAAGACTCCTAAAAATCTGGATTCAGAGCTGAAAGAACCACCAGAAAATGGAAAAGTATCCAAAAAGAAATCATCAAAACAGTTGAAGGCGGTTAAGGATTCATCAGACAAGAATAGTGTAGAGCGGAGGAGAGAATACTTTGAACGGGAGATGGAGAAACGAACTATTCGTAGAAGCCCATTAGGTAAAGACCGAGATTACAATAGGTATTGGTGGTTCCGCCGCGATGGAAGGATATTTGTTGAAAGCTGCGACTCCAAGGAGTGGGGATACTACAGCAGCAAGGAAGAGCTTGATGCATTGATGGGTTCACTGAATTGCAAGGGTGAGCGTGAAAGGGAACTGCAAAAACAACTGGAAAAAAGTTATACTAGTATATGTTCAGAACTGCAAAAAAGATCGAATTTGGTGCAGAATAGTGCCATTGACGAGTCTATACTTCGAAGGTCTACTCGTGTTCGAGCTCCACCCAGGGAAAACCCTGCCCATGCTTTCCTCAAATATGTTAACAAGTGGAAAGATGAGTAA 2211 0.4003 MPLLKKKSFALTEPPQDLKPEEHVYQVRFTKEIFRDYPGYLSRLNLYRQRVWACKVTGKTGLTYEEALVSEQRATEKFLQFPKEFMTPALKIIQFSMLPLKELADSIAEKLQERLFIGAELYGKKDDGLCPCRILKVIQEGVNKYRYEVAWLDKNKNISEKTEISAEDLVQKKPLFSRNILKSIIRESTYRSAPWVLHNKLAQNQGISTEVPEELRGKVFLKDGLIVCSKKRNNEESMEEADKLKKKKLDRTLVNGSAREKENVECKEIPIKYPIDDLLVKPSPDDPVFTVRPPPSRDFNVPIHCVGDLLMVWDFCTSFGKQLHLWPYSLEDFENAICHKDSNVVLLVESHAALFRVLIKDDGEYTSVVEKRNVKKITMVNWGEYLCDFLEMINIPRLRNYEATIKRGHYGLVDANAKLELLSELVNRVLETAVFREKLDKLIEQRHELGASKREEALELGRKKREKKERLKADSESNGHHLIDSADILTNNNHIMQNGHMEKKTNGEIESSIQDNSLGSSGIKHSSPASEKTPKNLDSELKEPPENGKVSKKKSSNPASEKTPKNLDSELKEPPENGKVSKKKSSKQLKAVKDSSDKNSVERRREYFEREMEKRTIRRSPLGKDRDYNRYWWFRRDGRIFVESCDSKEWGYYSSKEELDALMGSLNCKGERERELQKQLEKSYTSICSELQKRSNLVQNSAIDESILRRSTRVRAPPRENPAHAFLKYVNKWKDE 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03343 736 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 1 734 - -
Vifa6g03343 736 MobiDBLite consensus disorder prediction 512 601 - -
Vifa6g03343 736 Pfam DDT domain 304 361 IPR018501 -
Vifa6g03343 736 SMART testlast3 303 364 IPR018501 -
Vifa6g03343 736 Pfam ATP-utilising chromatin assembly and remodelling N-terminal 24 120 IPR013136 -
Vifa6g03343 736 ProSiteProfiles DDT domain profile. 303 364 IPR018501 -
Vifa6g03343 736 MobiDBLite consensus disorder prediction 535 601 - -
Vifa6g03343 736 MobiDBLite consensus disorder prediction 512 534 - -
Vifa6g03343 736 ProSiteProfiles WAC domain profile. 22 127 IPR013136 -
Vifa6g03343 736 MobiDBLite consensus disorder prediction 460 481 - -
Vifa6g03343 736 MobiDBLite consensus disorder prediction 460 486 - -
Vifa6g03343 736 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 617 683 IPR028941 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03343 Vifa-Chr6 1096763349 1096771710 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03343 289 361 Homeobox Transcription Factor Family AT1G28420 37.805 1.58e-08 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Vifa6g03343 WAC_Acf1_DNA_bd 3.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03343 - - var:108323886 1015.76