Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03325 ATGGCTTCTTCTCCATTGCCGGTAGCATACCAAGCATGGACAAGTCTAGCAGTACCAGACTGGTTAAACAAAGGAGACAACACATGGCAAATGGTATCGGCCACTCTGGTTGGAATCCAAAGCATGCCGGGGCTCGTGATTCTCTACGGCAGCATAGTAAAAAAGAAATGGGCAGTTAACTCAGCTTTCATGGCGCTTTACGCTTTTGCGGCGGTTATAATCTGTTGGGTTACATGGGCTTATAAGATGTCATTTGGTGAACAACTTTTGCCCTTTTGGGGTAAGGCCGGGCCGGCTTTGGGCCAGAAATTTTTGATCAATCAGGCCGGGCTACCGGCTACGGCGCATTACTTTCACGATGGACAAGTTGAAACCAGTGAAGCTACGCCGTTTTATCCGATGGCCACTATGGTTTGGTTTCAGTGTGTTTTTGCGGCTATTTCGGTTGTTATATTAGCTGGTTCGGTTTTGGCCAGGATGAGTTTTAAGGCGTGGATGATGTTTGTGCCTCTTTGGTTAACTTTTTCTTATACAATTGGTGCTTTTAGTTTGTGGGGTGGTGGTTTTTTGTTTCAATGGGGTGTTATGGATTATTCTGGTGGTTATGTTATCCACCTTTCTTCTGGAATTGCTGGTTTCACTGCTGCTTATTGGGTGGGGCCAAGATCAAAGAAAGACAGAGAGAGATTCCCACCAAACAACGTGTTACTAACGTTGGCAGGGGCAGGTTTACTATGGTTAGGATGGGCAGGTTTCAATGGTGGAGATCCTTATTCAGCCAACACTGATTCCTCCATGGCTGTTCTAAACACAAACATTTGTGCTGCCACTAGCCTTTTGGTTTGGACATGGCTTGATGTCATTTACTTCAAGAAACCATCTGTAATTGGAGCTGTTCAAGGCATGATCACCGGCCTTGTTTGCATCACTCCCGGAGCTGGTCTGGTTCAAGGATGGGCAGCCATAGTAATGGGTGTACTATCAGGAAGCGTACCATGGTACACAATGATGGTACTTGGAAAAAAGTTCACAATATTTCAAAAGGTTGACGACACCCTCGCCGTCTTCCACACTCACGCGGTGGCCGGCCTACTAGGCGGTATACTCACCGGCCTATTCGCCGAGCCAACACTAAGTTCTCTCTTTCTCCCCGTCACGAACTCCAAAGGCGGTGTCTACGGAGGCTCCGGTGGTGTCCAAATCCTCAAACAAATAGTTGGAGCATTATTCATCATTGGATGGAACATTGTTGCCACTTCAATTATTTGTGTAGTTGTAGGTTTTTGTGTTCCTTTAAGAATGACGGAGGAAGAGTTGCTTATTGGAGATGATGCTGTTCATGGTGAAGAAGCTTATGCTTTGTGGGGTGATGGAGAGAGACTTAGTCTCTATAAAGATGATACTACACGACAGGGAGTTTTGGCTTCAAGTGGTGCCACTCAAGTTGTTTAG 1452 0.4607 MASSPLPVAYQAWTSLAVPDWLNKGDNTWQMVSATLVGIQSMPGLVILYGSIVKKKWAVNSAFMALYAFAAVIICWVTWAYKMSFGEQLLPFWGKAGPALGQKFLINQAGLPATAHYFHDGQVETSEATPFYPMATMVWFQCVFAAISVVILAGSVLARMSFKAWMMFVPLWLTFSYTIGAFSLWGGGFLFQWGVMDYSGGYVIHLSSGIAGFTAAYWVGPRSKKDRERFPPNNVLLTLAGAGLLWLGWAGFNGGDPYSANTDSSMAVLNTNICAATSLLVWTWLDVIYFKKPSVIGAVQGMITGLVCITPGAGLVQGWAAIVMGVLSGSVPWYTMMVLGKKFTIFQKVDDTLAVFHTHAVAGLLGGILTGLFAEPTLSSLFLPVTNSKGGVYGGSGGVQILKQIVGALFIIGWNIVATSIICVVVGFCVPLRMTEEELLIGDDAVHGEEAYALWGDGERLSLYKDDTTRQGVLASSGATQVV 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03325 483 Pfam Ammonium Transporter Family 29 452 IPR024041 GO:0008519|GO:0016020|GO:0072488
Vifa6g03325 483 FunFam Ammonium transporter 9 455 - -
Vifa6g03325 483 ProSitePatterns Ammonium transporters signature. 197 222 IPR018047 GO:0008519|GO:0016020|GO:0072488
Vifa6g03325 483 Gene3D Ammonium transporter AmtB like domains 8 455 IPR029020 -
Vifa6g03325 483 SUPERFAMILY Ammonium transporter 21 434 - -
Vifa6g03325 483 PANTHER AMMONIUM TRANSPORTER MEP2 14 460 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vifa6g03325 483 NCBIfam ammonium transporter 26 452 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03325 Vifa-Chr6 1091654905 1091657446 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03325 134 471 Inorganic Solute Cotransporters AT2G38290 69.822 3.89e-167 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03325 K03320 - gmx:100785993 879.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03325 6 1091654905 1091657446 Vifa6g03325 6 1091654905 1091657446 ECH