Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03324 ATGTTCCCCAAACTAGGATTGATTAGTTTTGCAATCAAAGATCCTGATATAGAAGGTGAAGCCCTTCTTGATCTTTTGAATAGTCTCAATGATTCGAATAATCAAATAAAAGATTGGGATAGTCATTTAGTGAGCCCTTGTTTCAGTTGGTCACATGTAACTTGTAGAAATGGACATGTTATATCTCTGACTCTGGCATCGATTGGACTTTCTGGAACACTTTCTCCCTCAATTACCAGATTGGAATATTTGGTTGACTTGGAATTGCAGAACAACAATCTTTCAGGCCCTTTACCTGATTACATTGCCAACTTGACATTCCTACAATATCTAAATCTCGCTAACAATAATTTCAACGGTTCAATACCAGCTACATGGGGTCAACTATCTAATCTCAACAATGTGGATCTTTCGTCTAATGATCTTACCGGAACTATCCCAACACAACTCTTTTCAGTTCCGATGTTTAACTTTTCGGATACGCGCCTTGGTTGCGGCGGCTCTAGCTTCGAGCAGCCTTGTGTTTCTAAATCTGATCATCCAGATTCAACCAACAAATCAAAATTGGCAAAAGTCGTGCGTTATGCAAGTTGTGGTGCTTTTGCACTTCTGATTCTCGGGGCCATCTTTACATATCGATATCATCAAAAGGACAGACACAAAAATGATGTCTTTGTAGATGTTTTAGGTGAAGATGAGACCAAAGTTTATTTTGGCCAATTAAGAAAGTTTTCTTTGCGCGAACTCCAACTTGCGACTAAAAATTTCAGCGAAAGCTGTGTCATTGGCCAAGGTGGGTTTGGAAAAGTGTACAAAGGAATTCTCTCGGATAACACAAAAATCGCGGTGAAACGCCTCACTGATTATCATAATGCTGGTGGAGAGGCTGCGTTCGAGAGAGAAGTTGATCTCATTAGTGTTGCAGTTCATAGAAACCTCCTAAGACTAATTGGATTCTTTTCAAACTCAACTGAAAGAATCCTTGTTTATCCATTCATGGAAAATTTAAGTGTAGCGTATCAATTAAGAGATTTGAAATCTGATGAGAAAGGCTTAGATTGGCCAAAAAGAAAGCGAGTGGCATTCGGTACTGCACACGGTTTGGAATATCTGCACGAGCAGTGCAATCCAAAGATAATTCACCGTGACCTAAAGGCTGCAAATATCCTTCTAGATGACGAGTTTGAACCTGTTCTTGGTGATTTTGGACTAGCCAAACTAGTTGATGCACGGATGACTCATGTTACCACTCAAGTGCGCGGTACAATGGGTCATATTGCCCCGGAATATTTGTCAACTGGAAAATCATCAGAGAAGACAGATGTTTTTGGATACGGCATAACACTTCTCGAACTTATCACAGGTCAGCGTGCTATTGACCTCTCTCGGCTCGAAGAAGAGGAGGACGTTCTTCTCATTGATCATGTAAAAAATCTATTAAGAGAAAATAGGCTGGAGGACATAGTGGATAACAATTTGGACACATATCATCCAAAAGAAGTCGAAACCATTCTTCAAGTCGCATTACTTTGCACACAATGCTATCCAGAGGATCGTCCGACGATGTCCGAGGTCGTAAAAATGTTGCAGGGAGTCGGATTAGCAGATAGATGGGCGGACTGGAAGCAACTTGAAGAGGCTAGAAATCAAGAAATAGAATTGTCACTCATGACTCATCAATTTCCTTGGAGTGATGAATCAACTCTTGATCAAGAAGCTATACAACTTTCAAGAGCAAGATAG 1743 0.4039 MFPKLGLISFAIKDPDIEGEALLDLLNSLNDSNNQIKDWDSHLVSPCFSWSHVTCRNGHVISLTLASIGLSGTLSPSITRLEYLVDLELQNNNLSGPLPDYIANLTFLQYLNLANNNFNGSIPATWGQLSNLNNVDLSSNDLTGTIPTQLFSVPMFNFSDTRLGCGGSSFEQPCVSKSDHPDSTNKSKLAKVVRYASCGAFALLILGAIFTYRYHQKDRHKNDVFVDVLGEDETKVYFGQLRKFSLRELQLATKNFSESCVIGQGGFGKVYKGILSDNTKIAVKRLTDYHNAGGEAAFEREVDLISVAVHRNLLRLIGFFSNSTERILVYPFMENLSVAYQLRDLKSDEKGLDWPKRKRVAFGTAHGLEYLHEQCNPKIIHRDLKAANILLDDEFEPVLGDFGLAKLVDARMTHVTTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELITGQRAIDLSRLEEEEDVLLIDHVKNLLRENRLEDIVDNNLDTYHPKEVETILQVALLCTQCYPEDRPTMSEVVKMLQGVGLADRWADWKQLEEARNQEIELSLMTHQFPWSDESTLDQEAIQLSRAR 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03324 580 SUPERFAMILY Protein kinase-like (PK-like) 235 530 IPR011009 -
Vifa6g03324 580 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 11 539 - -
Vifa6g03324 580 ProSitePatterns Protein kinases ATP-binding region signature. 262 284 IPR017441 GO:0005524
Vifa6g03324 580 Pfam Protein kinase domain 259 527 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g03324 580 Gene3D Phosphorylase Kinase; domain 1 225 332 - -
Vifa6g03324 580 SMART serkin_6 256 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g03324 580 FunFam Somatic embryogenesis receptor kinase 1 225 332 - -
Vifa6g03324 580 SUPERFAMILY L domain-like 19 154 - -
Vifa6g03324 580 Gene3D Transferase(Phosphotransferase) domain 1 333 548 - -
Vifa6g03324 580 FunFam Somatic embryogenesis receptor-like kinase 1 333 549 - -
Vifa6g03324 580 Pfam Leucine rich repeat N-terminal domain 18 55 IPR013210 -
Vifa6g03324 580 ProSitePatterns Serine/Threonine protein kinases active-site signature. 379 391 IPR008271 GO:0004672|GO:0006468
Vifa6g03324 580 Gene3D Ribonuclease Inhibitor 15 195 IPR032675 -
Vifa6g03324 580 FunFam Nuclear pore complex protein NUP107 16 163 - -
Vifa6g03324 580 ProSiteProfiles Protein kinase domain profile. 256 539 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03324 Vifa-Chr6 1090019850 1090023423 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03324 7 580 Receptor kinase-like Gene Family AT5G10290 54.967 0.0 625
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vifa6g03324 Pkinase 2.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03324 - - gmx:100800886 953.355