Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03285 ATGGGCAAGGAAGATGAGACAGACATGAGAAAACAAGTTGGTGATGATGGTTCCTCGCGTGTCGAGACTGGCGATTTAGAATCTCGCTCTCGACTTAGTATTGAGAGGGAAATGGGATTGCCATGTTGTCGCGTGTGCCACTGTGCTGAGTCTGATAAGCGCGGAGACGCTGCACTAGAGTTTTTGGGTATTACCCCGGTTATAGAAAACAAGGGGGAACTCAAGTCTGATGACCAGGGAATTGCAAAAGATACGCCTCTTAACCGAAATGTCAAAAGCCAATCTGGGATGATGGAATTTGTAGGCCCTGATGGGGAGGTTTTCGTATGTAACAATGATTTGGAAAATGGTTTGTCTCACCAAGATACGTTGCTAGAACTTGGTTGTTCTTGTAAAAATGACCTTGCTTTGGTACACTATGCTTGTGCACTCAAGTGGTTTATCAACCATGGATCTACCATTTGTGAAATATGTGGACATGTAGCAAATAATATTAAGATATCTGACTTTAACAAGGTTGTTGGTTCTTTGAAAGAGTATGAAGCGTTGAGGGAAAGGACTGTCAACGGAGATCCTGGTCCTGCGCAAGATCATCCAAATACTACTGTGGATCCTGATGCTGTGGCTGCTATTCGGAGGCAACGGTTAAGTGAAATTGCATTATGGTTTTGTCCTCATAATAGCAGTAACTTTAACGACAATAGCAATGCGGACTCAGTTTCACAGCTTGTTTCTCAGCAACCGTTGAATATTTTTGTCGAAGAAGCTGGCCCCGTACAGAACACTGCAACTAAGTGGGCCGTAGAAGGTACTGGGATCCTCCTTGCTACAGGACTGCTTACCATCACCCTTGCATGGCTTATAGCTCCTCGTGTTGGGAAGAAAACTGCAAGAAGTGGTCTTCATATCCTACTCGGAGGTGTTTGTGCTTTAACGGTGGTGATTTTTTTCCGCTTCTTTGTGCTTACCAGAATCAGGTATGGACCTGCACGATATTGGGCAATATTGTTTGTTTTCTGGTTTCTTGTCTTTGGAATATGGGCTTCTCGGACACACAGTGCCAATACAACATGA 1074 0.4413 MGKEDETDMRKQVGDDGSSRVETGDLESRSRLSIEREMGLPCCRVCHCAESDKRGDAALEFLGITPVIENKGELKSDDQGIAKDTPLNRNVKSQSGMMEFVGPDGEVFVCNNDLENGLSHQDTLLELGCSCKNDLALVHYACALKWFINHGSTICEICGHVANNIKISDFNKVVGSLKEYEALRERTVNGDPGPAQDHPNTTVDPDAVAAIRRQRLSEIALWFCPHNSSNFNDNSNADSVSQLVSQQPLNIFVEEAGPVQNTATKWAVEGTGILLATGLLTITLAWLIAPRVGKKTARSGLHILLGGVCALTVVIFFRFFVLTRIRYGPARYWAILFVFWFLVFGIWASRTHSANTT 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03285 357 PANTHER ZINC FINGER, RING-CH-TYPE 9 324 - -
Vifa6g03285 357 SMART ringv_2 109 159 IPR011016 GO:0008270
Vifa6g03285 357 ProSiteProfiles Zinc finger RING-CH-type profile. 102 165 IPR011016 GO:0008270
Vifa6g03285 357 SUPERFAMILY RING/U-box 122 162 - -
Vifa6g03285 357 Pfam RING-variant domain 122 158 IPR011016 GO:0008270
Vifa6g03285 357 MobiDBLite consensus disorder prediction 1 30 - -
Vifa6g03285 357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 162 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03285 Vifa-Chr6 1082293379 1082295936 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03285 1 347 C3H Transcription Factor Family AT5G08750 62.465 3.27e-151 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03285 - - gmx:100805323 516.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03285 6 1082293379 1082295936 Vifa6g03285 6 1082293379 1082295936 ECH