Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03283 ATGAAAACCCTCTCTCTTCCGCCGTTGTTTGCTCATACTCCTAGAGCTTTTGGAAACGGTTTAACCTTAACCACAAAGTGTTTTCCCAAGCAACTTCATTTCAACTCTCCATGTCTTGTTTTCTCTACACACTCGAATTCTGCAACTCTATCTGTGGAATCACAAGTAGAAACGAAGCAAGTATTTGATGGAGACAAGGCTTCTTTGCTTGTTAGTGAGCTTAGAAAGAATTTTGATTCAGGTAAGACTAAGAGTTATGAATGGCGGATTTCGCAATTGGAGTCCATAGCTAACATGTTAGTTGAGAAAGAGGAACAAATTATTGATGCTCTTGTTAAGGACCTTTCTAAACCTAGAACGGAAGCATATATAACTGAGATATTCCAGGTGAAATCTTCATGTAATGAAACACTTCAAGAACTCAAGCACTGGATGAAGCCTGAAAAGGTCAGCACTTCAATCACAACATTTCCATCATCAGCAGAGATTGTTTCAGAACCATTAGGAGTTGTGTTGATCATATCGACATGGAACTTTCCTTTCTCATTATCATTGGATCCGATCATTGGAGCGATTGCAGCAGGCAACACAGTGGTTTTGAAACCATCCGAAATTTCTCCTGCAGTATCATCCCTGCTTGCAAATTTGCTAGCAACTTATCTAGATAATTCTGCAGTAAGAGTTGTTGAAGGTGCTGTTCCTGAAACAACTGCACTCTTGGAACAGAAGTGGGATAAGATACTTTATACAGGTAGTGCTCGAGTAGGTCGCATTGTTATGGCTGCAGCTGCAAAGCATCTTACTCCAGTGATTCTGGAGCTTGGAGGAAAATGTCCGGCTGTTGTTGATTCAAATATCAACTTACAAGTCACTGCTAGGAGGATAATAGCTGGCAAATGGGCATGCAATAGTGGACAAGCATGCATTTCTGTTGATTATATCATCACAAGAAAAGACTTTGCTCCAACACTTATAACTGCTTTAAAAGAAGAGTTAGAGCAATTTTTCGGGAAAGATCCGATAGAATCGAAAGACATGTCTCGTATTGTGTCTCCAACCCAATTCGCACGACTTGTGAGACTCTTGGATGATGATAAGGCATCTGATAAAATTGTTTTAGGAGGTCAGAGAGATGAGAAGAAATTAAAGATTGCTCCAACTATCTTATTAGATGTTCCAGAAGAAGCTATGGTTATGCAAGAGGAGATATTTGGGCCAATATTACCAATTATCACTGTAGACAACATAGAAGATAGTTTCAGTATAATAAAATCAAGGCCAAAACCTCTCGCAGCATATCTCTTCACAAACAATGAGCAGCTGAAGAAGGATTATGTTGATAAGATATCTTCTGGAGGAATGCTCATCAACGACGCTGTTGTGCATGTTGCAACTCGTGGATTGCCTTTTGGAGGAGTTGGAGAGAGTGGAATGGGCGCTTACCATGGAAAGTTCTCTTTTGACGGTTTCAGCCATAAGAAGGCAGTTTTATATAAAGGTTTTGGTTCAGATCCATCCATAAGGTATCCACCATACACGCCGGAGAAGGTAAAATTGTTGAGGGCCATTTTAGATGGTAGTATTTTTCATATTATTCTTGCTTTGCTTGGATGGTCTAAATAA 1623 0.3974 MKTLSLPPLFAHTPRAFGNGLTLTTKCFPKQLHFNSPCLVFSTHSNSATLSVESQVETKQVFDGDKASLLVSELRKNFDSGKTKSYEWRISQLESIANMLVEKEEQIIDALVKDLSKPRTEAYITEIFQVKSSCNETLQELKHWMKPEKVSTSITTFPSSAEIVSEPLGVVLIISTWNFPFSLSLDPIIGAIAAGNTVVLKPSEISPAVSSLLANLLATYLDNSAVRVVEGAVPETTALLEQKWDKILYTGSARVGRIVMAAAAKHLTPVILELGGKCPAVVDSNINLQVTARRIIAGKWACNSGQACISVDYIITRKDFAPTLITALKEELEQFFGKDPIESKDMSRIVSPTQFARLVRLLDDDKASDKIVLGGQRDEKKLKIAPTILLDVPEEAMVMQEEIFGPILPIITVDNIEDSFSIIKSRPKPLAAYLFTNNEQLKKDYVDKISSGGMLINDAVVHVATRGLPFGGVGESGMGAYHGKFSFDGFSHKKAVLYKGFGSDPSIRYPPYTPEKVKLLRAILDGSIFHIILALLGWSK 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03283 540 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 75 494 IPR016162 GO:0016491
Vifa6g03283 540 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 276 476 IPR016163 GO:0016620
Vifa6g03283 540 PIRSF ALDH 48 535 IPR012394 GO:0006081
Vifa6g03283 540 Pfam Aldehyde dehydrogenase family 67 496 IPR015590 GO:0016491
Vifa6g03283 540 PANTHER ALDEHYDE DEHYDROGENASE 67 531 IPR012394 GO:0006081
Vifa6g03283 540 SUPERFAMILY ALDH-like 71 510 IPR016161 GO:0016491
Vifa6g03283 540 FunFam Aldehyde dehydrogenase 276 476 - -
Vifa6g03283 540 FunFam Aldehyde dehydrogenase 75 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03283 Vifa-Chr6 1082264964 1082268000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03283 18 540 Aldehyde Dehydrogenase Gene Family AT4G34240 63.671 0.0 673
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03283 K00128 - gmx:100800699 847.81