Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03281 ATGCAAGGTGCATTAGAGTTACCTCCTGGCTTCAGATTTCACCCTACTGATGATGAGCTTGTGAATCATTATTTATGTAGAAAGTGTGCTTCTCTCCCAATCTCTGTCCCTATTATCAAAGAAATTGATTTATATAAGTTTGATCCATGGCATCTTCCCGAAATGGCTCTTTACGGTGAGAAAGAATGGTATTTTTTCTCTCCACGGGACCGGAAATATCCAAACGGTTCACGGCCGAACCGGGCTGCCGGAACCGGTTACTGGAAAGCGACCGGAGCCGATAAGCCGATTGGGAAGCCGAAGCCGCTTGGGATTAAGAAAGCTCTTGTTTTCTACGCTGGGAAAGCTCCTAAAGGTGTTAAAACTAATTGGATCATGCATGAATATCGACTTGCAAACGTTGATAGATCCGCAGCAAAAAATAACCGCAATTTAAGACTTGATGATTGGGTGTTGTGTCGAATATACAACAAGAAAGGGAAGATTGAGAAATACAATGATGATGAAAATACAAAAGAATCATCAATGTTTTGTGAGGATGTTCAATTTGAGAATGAGACGAAGCCTAAGATCAAAACGAACGGTCACGATGATTTCGGGATTATAAACGAGCAGTTATACACTGACACGTCAGATTCGGTGCCACGGTTTCACACGGATTCAAGCTGTTCTGAGCACGTGGTTTCGCCGGATGTCACGTGCGATAAGGAGGTTCAAAGTGAGCCGAAATGGAACGAATTTGATCCAGTGTCGGCGTTTGATTTTCAGTTGAATTTTATGGATGATGGTGAAGATGACCCTTTTGCCCCTCAGGTTCAGTATCAAATGAATCAACTTTCGGGTTGGCATGATGTGTTTACGTACCTGCCCAAGTAA 876 0.4292 MQGALELPPGFRFHPTDDELVNHYLCRKCASLPISVPIIKEIDLYKFDPWHLPEMALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGKPKPLGIKKALVFYAGKAPKGVKTNWIMHEYRLANVDRSAAKNNRNLRLDDWVLCRIYNKKGKIEKYNDDENTKESSMFCEDVQFENETKPKIKTNGHDDFGIINEQLYTDTSDSVPRFHTDSSCSEHVVSPDVTCDKEVQSEPKWNEFDPVSAFDFQLNFMDDGEDDPFAPQVQYQMNQLSGWHDVFTYLPK 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03281 291 SUPERFAMILY NAC domain 3 158 IPR036093 GO:0003677|GO:0006355
Vifa6g03281 291 FunFam NAC transcription factor 16 162 - -
Vifa6g03281 291 ProSiteProfiles NAC domain profile. 7 158 IPR003441 GO:0003677|GO:0006355
Vifa6g03281 291 Gene3D NAC domain 16 164 IPR036093 GO:0003677|GO:0006355
Vifa6g03281 291 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Vifa6g03281 291 PANTHER NAC TRANSCRIPTION FACTOR 56 7 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03281 Vifa-Chr6 1081525550 1081526621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03281 1 291 NAC Transcription Factor Family AT1G01720 61.184 4.40e-120 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa6g03281 NAM 8.6e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03281 - - gmx:100170751 466.463