Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03273 ATGGCGAACAAGAGCGTAAAAAAACCTCAGAGTCTCAACGATAGTCACTATCGCTTCCTTCAGGATTTCTCCGCTCCTCCTAAACCCCTCAACAATGATCAATACGATACTCCGATTCAACCTCGAAGCCTCATGTATCACGACGATGATACTATTCCGCAGTTTTCCGCTATCACTGACTTCGATTCTCCGATCGATCAAAATTCTCCGGAGAATAATCATCCTGTTTATGTAGAAGAAGCTCATCTACCTTACAAGGTTTCGCAGTTTTTCGATAATTGTCAAAATTATTCCGAGAATCGCCAACAAGCTAAGGTGGAGGAAGTTCCTATTCCTGATAGGGTTCCACAGTTTTTCGACAGTGTTTCTCCTGGTCAAAATTATGCGGAGAAAGACCAATCAGTTAATGTAGAAGAAGATCTTCTTCCAAAGGAGGTTCCACAGGGTTTGAATGATTATTCTCTCGGTCAAAATTATGCTGAGAAACGCCAACCAGTTAATGTAGAAGAAGCTCTTCTTCCAAAGGAGGTTCCACAGGGTTTGAATGATTATTCTCTCAGTAAAAATTATGCGGAGAAACACCAGCCAGTTAATGTAGAAGAATCTCTTCTTCCAAAGGAGGTTCCACAGGGTTTGGATGGTTATTCTCCTAGTCCAAATTATCTGGAGAATTCCCAACCAGTTAAGGTAGAAAAAGCTCCTTTTTCCAAGGAGGTTCTAGAGGATTTGGATGATTATTCTCCTAGTCCAAATTATCTGAAGAATTCCCAACCAGTTAAGGTAGAAAAAGCTCTTCTTCCCAAGAAGGTTCCACAGGATTTGGATGATTATTCTCTTAGTCCAAATTCTTTAGAGAATAGCCGACCAGTTAATGTAGAAAAAGCTCCTCTTAACAAGGTTCCACATAGTTTCGTCAGTTCTTCTCTTGAGGAGGAAAAGAAGACTAAGGTTAAGGTGCAAGGGCGGCGCCGTCTTTGCAAGGTTGCGGATACAGATGCTAGCAAAAATGTGGCAGTTGATAATTCTAAGTTCGATGATCTTGTGGACTTTGATTCGCCTATTCCAGTGCGAAAAAATGTGATTGAGATTGAGGAGAGTAGGGGTAAGAGTGAAATTAGGGATATTTTGTATGAGCTTAGCTCCAAGTTTGATGCTCTATCAGTTGAAAAGAAGCCAAAGCCTGCTGAGCGTTTTGTGGGAGGGAAAGGAATTCTTGAAGACAAGGGTTTTGAATTTGCGAGTGCTGGATCCTCATTTTCCCGTAAACAGGAGCCCCATGACTTCGCATCAAAGAATACTAAGAATGATATTGATGGTGTTGAGTATGATTCAGATGATTCGGTTCAGGTGTTGGACCTTGAGCCTGAGAATGATGGTTCTATTACATTGAATGACCCAAGGTCGACATATAAGTTGCAGCCTAAGATTGCAAAGATGTTGTATCCACATCAGCGGGAAGGATTGAAGTGGCTCTGGTCATTGCATGTTCGGGGTAAAGGTGGAATTTTGGGAGATGACATGGGTTTGGGAAAAACAATGCAGATTTGTGGCTTTATAGCTGGACTGTTTCATTCCCGTTTAATTAGAAGGGTGTTGGTTGTGGCCCCCAAAACACTATTGCCACATTGGATCAAAGAGTTAACTGTTGTTGGTCTATCTGAGAATACAAAAGAATATTTTGGAACTTGTGCAAAAGCCAGAGAATATGAACTTCAGTACATACTTCAGAACAGAGGTGTTCTTCTCACCACATATGATATTGTCCGCAACAATACCAAGTCCTTACAGGGGCATAGGTATTTGAACAACGAGGATAATGAAGATGACCCTACGTGGGACTACATGATACTTGATGAGGGGCACCTTATAAAGAACCCAAACACTCAGAGGGCTAAAAGTTTGCTTGAGATACCCAGTGCTCATCGCATTATCATTAGTGGCACACCATTGCAAAATAATCTCAAGGAATTGTGGGCATTGTTCAATTTCTGCTGCCCTGAGTTGCTTGGTGACAAGAAATGGTTCAAAGATAAATATGAAACACCTATACTTCGTGGAAATGATAAAAATGCCTCTGACAGAGAGAAGCGTACTGGTTCATCTATAGCAAAGGAGCTAAGGGATCATATTCAGCCTTACTTTTTGAGACGTTTGAAGAGTGAGGTTTTCAATCAAGATACTGAAAAAACAACAGCAAAACTTTCTCAGAAACAAGAAATCATTGTGTGGCTTCGGTTGTCCAATATTCAGCGGCATCTTTATGAAGCATTTTTGAAGAGTGAGATTGTTCTCTCAGCATTCGATGGTTCACCTCTGGCCGCCCTTACGATTTTGAAGAAAATATGTGATCATCCACTTCTATTGACAAAACGGGCAGCCGAGGATGTATTGGAAGGGTTGGACTCAATGCTTAAGCCAGAGGAGGTTAGTGTTGCTGAGAAATTGGCGATGCATATAGCAGATGTTGCAGAAACAGATAAGTTTAAAGATGAGCATGATGTATCATGCAAAATATCTTTCATTATGTCATTATTGGATAATTTGATCCCTGAAGGTCATAGGGTTCTTATTTTTTCTCAGACTCGCAAGATGCTTAATCTTATCCAGGAATGCATAACATCCAAAGGTTATGACTATTTACGCATTGATGGCACAACAAAATCCAGTGACAGAATAAAAGTCGTCGATGATTTCCAAGATGGTGTTGGAGCCCCAATATTTCTGTTGACATCTCAGGTTGGCGGTTTAGGACTTACGCTTACAAGAGCAGATCGTGTGATTGTTGTTGATCCTGCTTGGAACCCAAGTACTGATAATCAAAGTGTTGACCGAGCATATCGTATTGGTCAAAAGAAAGATGTTATTGTGTATAGACTGATGACATGCGGAACTGTTGAAGAAAAGATCTACAGGAAGCAGGTATATAAAGGAGGATTATTCAAAACAGTTTCTGAACAGAAAGAACAAACTCGGTACTTTAGCCAGCAGGATCTTAGGGAGCTTTTCAGCCTCCCAAAAGAAGGGTTTGATGTGTCTGTTACCCAACGGCAATTGGATGAGAAACATGATTGTCGGCATATAGTAGATGCCTCTTTCCATGCGCATATAGAGTTCCTGAAACGTCAGGGCATTGCTGGAATTAGTCACCACAGTTTACTGTTTTCCAAGTCAGAGCCAGTTCAAGATGCTCCTGAGAATGAAGTAACAAGGATTCATAATCCTAAATATTTTGGAACTTCATCATCATCTTCACGTGAGCAAATTGTTGATGGAGCTGAGTTTGCTTTTAATCCCAAAGACGTTAATTTACACAAAAAAGACTCTTCTCCAAGTAGTGTTGGTAAATTGACTGAGTTAGAAATCAAGGATAGAATTGTCAGGCTCTCCCAAATGCTCTCAAATACGGCGATGGTTTCGAAATTACCTGACAAAGGAGAGAAACTACGGAAACGGATTACTGAGCTGAATCGGGCGCTTACTAAGCTGAAGATGGAACAAACAAACGTAGTGAATTTGGATGATATTACAGATGAATTTGAAAGGGTGGTGAATGTATAG 3558 0.407 MANKSVKKPQSLNDSHYRFLQDFSAPPKPLNNDQYDTPIQPRSLMYHDDDTIPQFSAITDFDSPIDQNSPENNHPVYVEEAHLPYKVSQFFDNCQNYSENRQQAKVEEVPIPDRVPQFFDSVSPGQNYAEKDQSVNVEEDLLPKEVPQGLNDYSLGQNYAEKRQPVNVEEALLPKEVPQGLNDYSLSKNYAEKHQPVNVEESLLPKEVPQGLDGYSPSPNYLENSQPVKVEKAPFSKEVLEDLDDYSPSPNYLKNSQPVKVEKALLPKKVPQDLDDYSLSPNSLENSRPVNVEKAPLNKVPHSFVSSSLEEEKKTKVKVQGRRRLCKVADTDASKNVAVDNSKFDDLVDFDSPIPVRKNVIEIEESRGKSEIRDILYELSSKFDALSVEKKPKPAERFVGGKGILEDKGFEFASAGSSFSRKQEPHDFASKNTKNDIDGVEYDSDDSVQVLDLEPENDGSITLNDPRSTYKLQPKIAKMLYPHQREGLKWLWSLHVRGKGGILGDDMGLGKTMQICGFIAGLFHSRLIRRVLVVAPKTLLPHWIKELTVVGLSENTKEYFGTCAKAREYELQYILQNRGVLLTTYDIVRNNTKSLQGHRYLNNEDNEDDPTWDYMILDEGHLIKNPNTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDKKWFKDKYETPILRGNDKNASDREKRTGSSIAKELRDHIQPYFLRRLKSEVFNQDTEKTTAKLSQKQEIIVWLRLSNIQRHLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGLDSMLKPEEVSVAEKLAMHIADVAETDKFKDEHDVSCKISFIMSLLDNLIPEGHRVLIFSQTRKMLNLIQECITSKGYDYLRIDGTTKSSDRIKVVDDFQDGVGAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGLFKTVSEQKEQTRYFSQQDLRELFSLPKEGFDVSVTQRQLDEKHDCRHIVDASFHAHIEFLKRQGIAGISHHSLLFSKSEPVQDAPENEVTRIHNPKYFGTSSSSSREQIVDGAEFAFNPKDVNLHKKDSSPSSVGKLTELEIKDRIVRLSQMLSNTAMVSKLPDKGEKLRKRITELNRALTKLKMEQTNVVNLDDITDEFERVVNV 1185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03273 1185 MobiDBLite consensus disorder prediction 1 42 - -
Vifa6g03273 1185 Gene3D - 454 716 IPR038718 -
Vifa6g03273 1185 CDD DEXHc_ERCC6L 480 717 - -
Vifa6g03273 1185 Gene3D - 736 1036 IPR027417 -
Vifa6g03273 1185 FunFam Protein CHROMATIN REMODELING 24 459 737 - -
Vifa6g03273 1185 MobiDBLite consensus disorder prediction 424 441 - -
Vifa6g03273 1185 MobiDBLite consensus disorder prediction 208 228 - -
Vifa6g03273 1185 CDD SF2_C_SNF 829 960 - -
Vifa6g03273 1185 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 469 717 IPR027417 -
Vifa6g03273 1185 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 733 1010 IPR027417 -
Vifa6g03273 1185 PANTHER SNF2/RAD54 FAMILY MEMBER 311 1160 - -
Vifa6g03273 1185 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 492 667 IPR014001 -
Vifa6g03273 1185 Coils Coil 1145 1165 - -
Vifa6g03273 1185 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 840 999 IPR001650 -
Vifa6g03273 1185 SMART helicmild6 866 949 IPR001650 -
Vifa6g03273 1185 MobiDBLite consensus disorder prediction 1 18 - -
Vifa6g03273 1185 Pfam SNF2-related domain 497 787 IPR000330 GO:0005524|GO:0140658
Vifa6g03273 1185 SMART ultradead3 475 675 IPR014001 -
Vifa6g03273 1185 Pfam Helicase conserved C-terminal domain 837 949 IPR001650 -
Vifa6g03273 1185 MobiDBLite consensus disorder prediction 416 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03273 Vifa-Chr6 1077661720 1077671584 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03273 480 1003 RAD5 or RAD16-like Gene Family AT1G02670 23.810 1.15e-33 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vifa6g03273 SNF2_N 8.6e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03273 K20093 - gmx:100779283 1397.49