Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa6g03273 | ATGGCGAACAAGAGCGTAAAAAAACCTCAGAGTCTCAACGATAGTCACTATCGCTTCCTTCAGGATTTCTCCGCTCCTCCTAAACCCCTCAACAATGATCAATACGATACTCCGATTCAACCTCGAAGCCTCATGTATCACGACGATGATACTATTCCGCAGTTTTCCGCTATCACTGACTTCGATTCTCCGATCGATCAAAATTCTCCGGAGAATAATCATCCTGTTTATGTAGAAGAAGCTCATCTACCTTACAAGGTTTCGCAGTTTTTCGATAATTGTCAAAATTATTCCGAGAATCGCCAACAAGCTAAGGTGGAGGAAGTTCCTATTCCTGATAGGGTTCCACAGTTTTTCGACAGTGTTTCTCCTGGTCAAAATTATGCGGAGAAAGACCAATCAGTTAATGTAGAAGAAGATCTTCTTCCAAAGGAGGTTCCACAGGGTTTGAATGATTATTCTCTCGGTCAAAATTATGCTGAGAAACGCCAACCAGTTAATGTAGAAGAAGCTCTTCTTCCAAAGGAGGTTCCACAGGGTTTGAATGATTATTCTCTCAGTAAAAATTATGCGGAGAAACACCAGCCAGTTAATGTAGAAGAATCTCTTCTTCCAAAGGAGGTTCCACAGGGTTTGGATGGTTATTCTCCTAGTCCAAATTATCTGGAGAATTCCCAACCAGTTAAGGTAGAAAAAGCTCCTTTTTCCAAGGAGGTTCTAGAGGATTTGGATGATTATTCTCCTAGTCCAAATTATCTGAAGAATTCCCAACCAGTTAAGGTAGAAAAAGCTCTTCTTCCCAAGAAGGTTCCACAGGATTTGGATGATTATTCTCTTAGTCCAAATTCTTTAGAGAATAGCCGACCAGTTAATGTAGAAAAAGCTCCTCTTAACAAGGTTCCACATAGTTTCGTCAGTTCTTCTCTTGAGGAGGAAAAGAAGACTAAGGTTAAGGTGCAAGGGCGGCGCCGTCTTTGCAAGGTTGCGGATACAGATGCTAGCAAAAATGTGGCAGTTGATAATTCTAAGTTCGATGATCTTGTGGACTTTGATTCGCCTATTCCAGTGCGAAAAAATGTGATTGAGATTGAGGAGAGTAGGGGTAAGAGTGAAATTAGGGATATTTTGTATGAGCTTAGCTCCAAGTTTGATGCTCTATCAGTTGAAAAGAAGCCAAAGCCTGCTGAGCGTTTTGTGGGAGGGAAAGGAATTCTTGAAGACAAGGGTTTTGAATTTGCGAGTGCTGGATCCTCATTTTCCCGTAAACAGGAGCCCCATGACTTCGCATCAAAGAATACTAAGAATGATATTGATGGTGTTGAGTATGATTCAGATGATTCGGTTCAGGTGTTGGACCTTGAGCCTGAGAATGATGGTTCTATTACATTGAATGACCCAAGGTCGACATATAAGTTGCAGCCTAAGATTGCAAAGATGTTGTATCCACATCAGCGGGAAGGATTGAAGTGGCTCTGGTCATTGCATGTTCGGGGTAAAGGTGGAATTTTGGGAGATGACATGGGTTTGGGAAAAACAATGCAGATTTGTGGCTTTATAGCTGGACTGTTTCATTCCCGTTTAATTAGAAGGGTGTTGGTTGTGGCCCCCAAAACACTATTGCCACATTGGATCAAAGAGTTAACTGTTGTTGGTCTATCTGAGAATACAAAAGAATATTTTGGAACTTGTGCAAAAGCCAGAGAATATGAACTTCAGTACATACTTCAGAACAGAGGTGTTCTTCTCACCACATATGATATTGTCCGCAACAATACCAAGTCCTTACAGGGGCATAGGTATTTGAACAACGAGGATAATGAAGATGACCCTACGTGGGACTACATGATACTTGATGAGGGGCACCTTATAAAGAACCCAAACACTCAGAGGGCTAAAAGTTTGCTTGAGATACCCAGTGCTCATCGCATTATCATTAGTGGCACACCATTGCAAAATAATCTCAAGGAATTGTGGGCATTGTTCAATTTCTGCTGCCCTGAGTTGCTTGGTGACAAGAAATGGTTCAAAGATAAATATGAAACACCTATACTTCGTGGAAATGATAAAAATGCCTCTGACAGAGAGAAGCGTACTGGTTCATCTATAGCAAAGGAGCTAAGGGATCATATTCAGCCTTACTTTTTGAGACGTTTGAAGAGTGAGGTTTTCAATCAAGATACTGAAAAAACAACAGCAAAACTTTCTCAGAAACAAGAAATCATTGTGTGGCTTCGGTTGTCCAATATTCAGCGGCATCTTTATGAAGCATTTTTGAAGAGTGAGATTGTTCTCTCAGCATTCGATGGTTCACCTCTGGCCGCCCTTACGATTTTGAAGAAAATATGTGATCATCCACTTCTATTGACAAAACGGGCAGCCGAGGATGTATTGGAAGGGTTGGACTCAATGCTTAAGCCAGAGGAGGTTAGTGTTGCTGAGAAATTGGCGATGCATATAGCAGATGTTGCAGAAACAGATAAGTTTAAAGATGAGCATGATGTATCATGCAAAATATCTTTCATTATGTCATTATTGGATAATTTGATCCCTGAAGGTCATAGGGTTCTTATTTTTTCTCAGACTCGCAAGATGCTTAATCTTATCCAGGAATGCATAACATCCAAAGGTTATGACTATTTACGCATTGATGGCACAACAAAATCCAGTGACAGAATAAAAGTCGTCGATGATTTCCAAGATGGTGTTGGAGCCCCAATATTTCTGTTGACATCTCAGGTTGGCGGTTTAGGACTTACGCTTACAAGAGCAGATCGTGTGATTGTTGTTGATCCTGCTTGGAACCCAAGTACTGATAATCAAAGTGTTGACCGAGCATATCGTATTGGTCAAAAGAAAGATGTTATTGTGTATAGACTGATGACATGCGGAACTGTTGAAGAAAAGATCTACAGGAAGCAGGTATATAAAGGAGGATTATTCAAAACAGTTTCTGAACAGAAAGAACAAACTCGGTACTTTAGCCAGCAGGATCTTAGGGAGCTTTTCAGCCTCCCAAAAGAAGGGTTTGATGTGTCTGTTACCCAACGGCAATTGGATGAGAAACATGATTGTCGGCATATAGTAGATGCCTCTTTCCATGCGCATATAGAGTTCCTGAAACGTCAGGGCATTGCTGGAATTAGTCACCACAGTTTACTGTTTTCCAAGTCAGAGCCAGTTCAAGATGCTCCTGAGAATGAAGTAACAAGGATTCATAATCCTAAATATTTTGGAACTTCATCATCATCTTCACGTGAGCAAATTGTTGATGGAGCTGAGTTTGCTTTTAATCCCAAAGACGTTAATTTACACAAAAAAGACTCTTCTCCAAGTAGTGTTGGTAAATTGACTGAGTTAGAAATCAAGGATAGAATTGTCAGGCTCTCCCAAATGCTCTCAAATACGGCGATGGTTTCGAAATTACCTGACAAAGGAGAGAAACTACGGAAACGGATTACTGAGCTGAATCGGGCGCTTACTAAGCTGAAGATGGAACAAACAAACGTAGTGAATTTGGATGATATTACAGATGAATTTGAAAGGGTGGTGAATGTATAG | 3558 | 0.407 | MANKSVKKPQSLNDSHYRFLQDFSAPPKPLNNDQYDTPIQPRSLMYHDDDTIPQFSAITDFDSPIDQNSPENNHPVYVEEAHLPYKVSQFFDNCQNYSENRQQAKVEEVPIPDRVPQFFDSVSPGQNYAEKDQSVNVEEDLLPKEVPQGLNDYSLGQNYAEKRQPVNVEEALLPKEVPQGLNDYSLSKNYAEKHQPVNVEESLLPKEVPQGLDGYSPSPNYLENSQPVKVEKAPFSKEVLEDLDDYSPSPNYLKNSQPVKVEKALLPKKVPQDLDDYSLSPNSLENSRPVNVEKAPLNKVPHSFVSSSLEEEKKTKVKVQGRRRLCKVADTDASKNVAVDNSKFDDLVDFDSPIPVRKNVIEIEESRGKSEIRDILYELSSKFDALSVEKKPKPAERFVGGKGILEDKGFEFASAGSSFSRKQEPHDFASKNTKNDIDGVEYDSDDSVQVLDLEPENDGSITLNDPRSTYKLQPKIAKMLYPHQREGLKWLWSLHVRGKGGILGDDMGLGKTMQICGFIAGLFHSRLIRRVLVVAPKTLLPHWIKELTVVGLSENTKEYFGTCAKAREYELQYILQNRGVLLTTYDIVRNNTKSLQGHRYLNNEDNEDDPTWDYMILDEGHLIKNPNTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDKKWFKDKYETPILRGNDKNASDREKRTGSSIAKELRDHIQPYFLRRLKSEVFNQDTEKTTAKLSQKQEIIVWLRLSNIQRHLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGLDSMLKPEEVSVAEKLAMHIADVAETDKFKDEHDVSCKISFIMSLLDNLIPEGHRVLIFSQTRKMLNLIQECITSKGYDYLRIDGTTKSSDRIKVVDDFQDGVGAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGLFKTVSEQKEQTRYFSQQDLRELFSLPKEGFDVSVTQRQLDEKHDCRHIVDASFHAHIEFLKRQGIAGISHHSLLFSKSEPVQDAPENEVTRIHNPKYFGTSSSSSREQIVDGAEFAFNPKDVNLHKKDSSPSSVGKLTELEIKDRIVRLSQMLSNTAMVSKLPDKGEKLRKRITELNRALTKLKMEQTNVVNLDDITDEFERVVNV | 1185 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa6g03273 | 1185 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
Vifa6g03273 | 1185 | Gene3D | - | 454 | 716 | IPR038718 | - | |
Vifa6g03273 | 1185 | CDD | DEXHc_ERCC6L | 480 | 717 | - | - | |
Vifa6g03273 | 1185 | Gene3D | - | 736 | 1036 | IPR027417 | - | |
Vifa6g03273 | 1185 | FunFam | Protein CHROMATIN REMODELING 24 | 459 | 737 | - | - | |
Vifa6g03273 | 1185 | MobiDBLite | consensus disorder prediction | 424 | 441 | - | - | |
Vifa6g03273 | 1185 | MobiDBLite | consensus disorder prediction | 208 | 228 | - | - | |
Vifa6g03273 | 1185 | CDD | SF2_C_SNF | 829 | 960 | - | - | |
Vifa6g03273 | 1185 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 469 | 717 | IPR027417 | - | |
Vifa6g03273 | 1185 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 733 | 1010 | IPR027417 | - | |
Vifa6g03273 | 1185 | PANTHER | SNF2/RAD54 FAMILY MEMBER | 311 | 1160 | - | - | |
Vifa6g03273 | 1185 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 492 | 667 | IPR014001 | - | |
Vifa6g03273 | 1185 | Coils | Coil | 1145 | 1165 | - | - | |
Vifa6g03273 | 1185 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 840 | 999 | IPR001650 | - | |
Vifa6g03273 | 1185 | SMART | helicmild6 | 866 | 949 | IPR001650 | - | |
Vifa6g03273 | 1185 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Vifa6g03273 | 1185 | Pfam | SNF2-related domain | 497 | 787 | IPR000330 | GO:0005524|GO:0140658 | |
Vifa6g03273 | 1185 | SMART | ultradead3 | 475 | 675 | IPR014001 | - | |
Vifa6g03273 | 1185 | Pfam | Helicase conserved C-terminal domain | 837 | 949 | IPR001650 | - | |
Vifa6g03273 | 1185 | MobiDBLite | consensus disorder prediction | 416 | 441 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa6g03273 | Vifa-Chr6 | 1077661720 | 1077671584 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa6g03273 | 480 | 1003 | RAD5 or RAD16-like Gene Family | AT1G02670 | 23.810 | 1.15e-33 | 137 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | SNF2 | Vifa6g03273 | SNF2_N | 8.6e-49 | CL0023 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa6g03273 | K20093 | - | gmx:100779283 | 1397.49 |