Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03267 ATGGATGATGAAACTCATACTACTTTGCCAAATGGATTCACCACAGAAATCCCTGAGTCTCAATGTTTAAAAACAATCAACAACAACAACAATAATCATCATAATAACACCACCACCAACAATAAAGAACAAGACCGTTTTCTTCCCATAGCAAACGTTGGTAGAATAATGAAAAAAGTGATTCCAGCAAACGGAAAAATCTCAAAGGATGCAAAAGAAACAGTTCAAGAATGTGTTTCTGAGTTCATAAGCTTCGTCACGGGCGAAGCTTCGGATAAATGTCAAAGAGAAAAGAGAAAAACTATCAATGGTGATGATATCATTTGGGCTATTACAACATTAGGGTTTGAAGATTATGTGGAACCCTTAAAATCTTATCTTCAAAAATATAGAGATATTGAAGGTGAGAAAGTTAATGTTCCTAAACAACAAAGATCTGAACAAAGGCTACATCAACAAAATCAACAACATAATCAAGATGAATTAAATAATCAACATTTCAATAATAGTTTATATACTTCAACAAATCTCATTTCTCAACCTTCTTATGTCACCAATGATCAACCATTTCCGTTACCTTTCTCGTCAAATTCGATTCAAAAACAGTTACGGCCGCAAGATCAGATCGATTCCATAGGCCATTGGTATGAATGA 654 0.3394 MDDETHTTLPNGFTTEIPESQCLKTINNNNNNHHNNTTTNNKEQDRFLPIANVGRIMKKVIPANGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVEPLKSYLQKYRDIEGEKVNVPKQQRSEQRLHQQNQQHNQDELNNQHFNNSLYTSTNLISQPSYVTNDQPFPLPFSSNSIQKQLRPQDQIDSIGHWYE 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03267 217 MobiDBLite consensus disorder prediction 189 217 - -
Vifa6g03267 217 PRINTS CCAAT-binding transcription factor subunit A signature 113 131 - -
Vifa6g03267 217 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Vifa6g03267 217 PRINTS CCAAT-binding transcription factor subunit A signature 94 112 - -
Vifa6g03267 217 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 47 111 IPR003958 -
Vifa6g03267 217 MobiDBLite consensus disorder prediction 189 207 - -
Vifa6g03267 217 Gene3D Histone, subunit A 33 171 IPR009072 GO:0046982
Vifa6g03267 217 ProSitePatterns NF-YB/HAP3 subunit signature. 78 94 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vifa6g03267 217 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 27 166 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vifa6g03267 217 SUPERFAMILY Histone-fold 44 162 IPR009072 GO:0046982
Vifa6g03267 217 FunFam Nuclear transcription factor Y subunit B-3 36 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03267 Vifa-Chr6 1076267960 1076268613 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03267 42 215 CCAAT-HAP3 Transcription Factor Family AT2G13570 68.681 1.86e-71 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vifa6g03267 CBFD_NFYB_HMF 3.1e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03267 K08065 - gmx:100778216 304.679