Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03265 ATGGCGAAGAAAATGGTTTTTGAGCTTTTCCATGATGTTGCTCCAAAGACTGCTGAAAATTTTCGTGCACTGTGTACCGGAGAAAGAGGAGTCAGTCCTAATACTGGAAAATCCCTGCACTACAAGGGTTCTTTCTTCCATCAAATCATAAAAGGCTCCATTGTGAAGGGTGGTGATTTTATCAATCGAAATGGGACTGGTGGAGAAAACATTTACCCCAAGTTCCCAGACGAGTCTCCTAAGCTAAAGCATGATTCTCTAGGCATTCTATCTATGGCAATTGCTGATCGTGACACTACTGGTTCACATTTTATCATCACTTTGAAAGCTGATCACCATCTGGATAGGAAGCATGTAGCTTTTGGCAAACTTGTGCTAGGGTATGATGTATTGAAGAAAACTGAAGATGTGGGCGATGAAGGACTCCCATCCGTAACTGTTAAAATAATTAATAGTGGTGAACATAACGAGGATGGTAAGAAGACACAGAAGTCAAAAATTGGAAGGAATGGATCTTCTGAAGCCATCAGTCATGAAGCACGGAGGAAGGGAAAACACAAAAAATCTTCAGTAGACAGAAGAAAAAAGAGAAAACATTACTCATCAGAATCAGACAGTTCCTCAGATTCAGACACAGAGTCTTCAGAAAGTGATAGTGACTCTGACTTGGATTTGTCCTCGTCATCTTACACAAGCTCTTCTAGTGATGACATGCGGAAGAAGAGAAAGAGATATAGAAAAGATAAACATAGACATGGAAAAAGAAGAGATAAACGGCGAGAAAAGAAGCGAAGGAAATTAGATAAGCGATCAAAACATAAATCAAAGAGGGAATCAGACAGTCAAACTGATGCAGATAGTGCAAGTAAGAGTAATGATAGCTCCAATGGCCAAGGTCTTGATACTCAGAGAAATGCCAAAGTCCAGTCATCCTCAGTTTTGGAGAAAGAATCATCTCCTATGGATCTTAAAAAGAGGGAGGGGCTGAGCAATGTAGAGGATGGAGAATTCCCAAAGGAAAATGGAGCACAGCGTAGCAACGGCACTGGGGCCAACCATAGATCTGACAGATACGAAGAGAGGCTGCCTGATGTGATGGATGATAATCCTGGAAAATCTAGGAGTCGAAGCATGAGTCCTAAGCAAACCGTGAGCAAGAGTATGATTATTAGTCCCAAGCGCAGGAGGCCTCAATTCAAAGATTTTATAAAAGTTATTCAACAAGAGCAGAATTCATACAAGGACCCCATCACCGAGTTTCTGGCTTGTGTTTATATCAACTATGACTTTGATGGCGCTCAAAAGAAGATGAGGGAGTGTGAAGAAGTAATTCTCAATGATCCCTTCCTTGTACAAAAACGAAAGCGCCGTATTTCTTGCAATGCCGATGACCCCGTTGGCTTTGCAAGTAATCTAGGTTTGACGGATGAGCTTTCAATGCAATTGAATAGGTATCATGAGAGCAGGAGCTATGATGCCAGTGCCTCTGAAGCTCCTAAGTCTACTAGAGCTGCTACTGTTACAAAGAAGTCGGAGTCAGAAGGGAAACCAGACTTGAATTGTGTTACAACTAGGACTGGGAAGCGATCTAGGCCATGTAGTTGGAAGAGGCGTAAATGCAAAAAGCAGAAGCAATCAACTGCTGAAGATGTTGATCTAAATATTCAATGCAAGTTGCTTCCAAATAATACAGATTGCATGCTTGCTAATCAACAGCATGGTAACACCAACTAA 1734 0.4152 MAKKMVFELFHDVAPKTAENFRALCTGERGVSPNTGKSLHYKGSFFHQIIKGSIVKGGDFINRNGTGGENIYPKFPDESPKLKHDSLGILSMAIADRDTTGSHFIITLKADHHLDRKHVAFGKLVLGYDVLKKTEDVGDEGLPSVTVKIINSGEHNEDGKKTQKSKIGRNGSSEAISHEARRKGKHKKSSVDRRKKRKHYSSESDSSSDSDTESSESDSDSDLDLSSSSYTSSSSDDMRKKRKRYRKDKHRHGKRRDKRREKKRRKLDKRSKHKSKRESDSQTDADSASKSNDSSNGQGLDTQRNAKVQSSSVLEKESSPMDLKKREGLSNVEDGEFPKENGAQRSNGTGANHRSDRYEERLPDVMDDNPGKSRSRSMSPKQTVSKSMIISPKRRRPQFKDFIKVIQQEQNSYKDPITEFLACVYINYDFDGAQKKMRECEEVILNDPFLVQKRKRRISCNADDPVGFASNLGLTDELSMQLNRYHESRSYDASASEAPKSTRAATVTKKSESEGKPDLNCVTTRTGKRSRPCSWKRRKCKKQKQSTAEDVDLNIQCKLLPNNTDCMLANQQHGNTN 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03265 577 MobiDBLite consensus disorder prediction 372 389 - -
Vifa6g03265 577 MobiDBLite consensus disorder prediction 489 506 - -
Vifa6g03265 577 MobiDBLite consensus disorder prediction 149 391 - -
Vifa6g03265 577 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 46 58 IPR002130 GO:0000413|GO:0003755
Vifa6g03265 577 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 103 115 IPR002130 GO:0000413|GO:0003755
Vifa6g03265 577 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 88 103 IPR002130 GO:0000413|GO:0003755
Vifa6g03265 577 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 9 24 IPR002130 GO:0000413|GO:0003755
Vifa6g03265 577 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 116 131 IPR002130 GO:0000413|GO:0003755
Vifa6g03265 577 MobiDBLite consensus disorder prediction 153 167 - -
Vifa6g03265 577 MobiDBLite consensus disorder prediction 352 371 - -
Vifa6g03265 577 MobiDBLite consensus disorder prediction 181 195 - -
Vifa6g03265 577 Gene3D - 1 155 IPR029000 -
Vifa6g03265 577 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 3 151 IPR002130 GO:0000413|GO:0003755
Vifa6g03265 577 SUPERFAMILY Cyclophilin-like 4 155 IPR029000 -
Vifa6g03265 577 MobiDBLite consensus disorder prediction 318 340 - -
Vifa6g03265 577 MobiDBLite consensus disorder prediction 242 272 - -
Vifa6g03265 577 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 2 154 - -
Vifa6g03265 577 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 1 154 IPR002130 GO:0000413|GO:0003755
Vifa6g03265 577 MobiDBLite consensus disorder prediction 285 317 - -
Vifa6g03265 577 MobiDBLite consensus disorder prediction 489 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03265 Vifa-Chr6 1075591466 1075593362 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03265 389 450 Eukaryotic Initiation Factors Gene Family AT3G57290 80.645 1.10e-28 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03265 K09566 - gmx:100785820 400.979