Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03259 ATGAAGGTGCAAGGTTGTGAAGTTGAAGCCATTGGCATAAACTACAAGATCCACACAAACAAAACAGAACACCCTTTTAAAATCTTCAGCAAATCACCACAACTAGATAATACTAATGGTCAAGAAACAGAAGATGAGGAAGAAGGAAGAAGAGGTGAAAAAAGTTGCAGTGGAGTGAGGCATGTGCTCAAGAATGTGAGTTTTCAAGCAAAACCATGGGAAATTCTGGCAATTGTTGGACCAAGTGGAGCTGGAAAGTCATCACTACTTGAGATCTTAGCAGTTGAAGAAACCATGATTTTTAGTGCAAGGCTAAGGCTAAAACTTCCTCAACAACAGCTATGTTCAAGGGTCAAGTCACTGATTAAAGAGCTTGGACTTGATCATGTTGCTGGGACTAGAATCGGCGATGATCGAGTCCGAGGTATATCAGGCGGGGAAAGGCGTAGGGTTTCTATTGGTGTTGAAATCGTACATGATCCAAAAGTTTTGATTCTTGATGAACCAACTTCTGGGCTTGACAGTACTTCAGCTTTGCAAATTATTGATATGCTTAAGGTTATGGCTGAAACTAGAGGAAGAACTATAATACTAAGTATTCATCAACCTGGTTTCAGAATTGTGAAGCTGTTCAATTCATTATTGTTGTTGGCTAATGGTTCTGTGCTACATCATGGGAGTGCTGATTTACTGAGTTTGAATTTGAGATTAATGGGTCTAGAGCTTCCTCTTCATGTTAATGTAGTTGAATTTGCTATTGATTCCATCGATACCATTCAGCAGCAACAACAATGTCAGGTGGAAACCGAAACGCAGAGGCTATTGCAAGGGACAATGCAACAGAAGAAAGGTGAACAACAACCAGGTGAAAGTAAAATTGGTAAGTTCACTTTGCAGCAGCTATTTCAACAATCTAAAGTAATTGATGAAGATATCATCAATAATAAAGGAACTGGAGTGGATTTCTCTTATGATTTTGCTAATTCTAGATTGAGAGAAACTATGATTCTAACTCATAGATTCTCCAAAAACATATTTCGTACAAGAGAGCTATTTGCATGTAGGACAATTCAGATGCTGATTTCAGGACTAGTTTTAGGATCAATCTTTTGTAACCTCAAAGATGATCTAAGAGGAACAGAAGAAAAGGTTGGTCTATTTGCTTTCATATTAACCTTTCTGTTATCAAGCAGCATAGAAGCTCTACCAATTTTTCTACAAGAAAGAGAAATTCTCATGAAAGAAACATCTTGCGGAAGCTACCGCGTGTCCTCTTATGCAATTGCAAATGGACTAGTTTACTTGCCATTTCTTCTAATCCTAGCCATTTTGTTCACAGTTCCTTTATACTGGCTTGTTGGTCTCAACACAAACTTCACTGCTTTTCTGCACTTTCTGTTACTGATATGGCTTATTCTTTATACAGCTAATTCAGTTGTGGTGTGTTTCAGTGCTCTTGTGCCTAATTTCATTGTTGGGAATTCAGTGATTAATGGTGTTATAGGTTCTTTCTTCTTGTTCTCTGGTTACTTCATATCAAACCACGAGATTCCTAATTACTGGATATTCATGCATTATATATCACTTTTTAAGTATCCCTTTGAAGGGTTTCTGATCAATGAGTTCTCCAATTCAAAAAAGTGTTTGGAGTACATGTTTGGTACATGTGTGATGAAAGGTGAGGATGTGCTTAAAGAAGAAGGGTATGGAGGAGAAGGTAGCAGATGGAAGAATGTTGGTGTCACTGTTGGCTTCATCATGGTTTACAGATTCATTTCCTATGTTATTCTGAGATACAAATGCTCAGAGAGAAGGGTCTAG 1821 0.3795 MKVQGCEVEAIGINYKIHTNKTEHPFKIFSKSPQLDNTNGQETEDEEEGRRGEKSCSGVRHVLKNVSFQAKPWEILAIVGPSGAGKSSLLEILAVEETMIFSARLRLKLPQQQLCSRVKSLIKELGLDHVAGTRIGDDRVRGISGGERRRVSIGVEIVHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTIILSIHQPGFRIVKLFNSLLLLANGSVLHHGSADLLSLNLRLMGLELPLHVNVVEFAIDSIDTIQQQQQCQVETETQRLLQGTMQQKKGEQQPGESKIGKFTLQQLFQQSKVIDEDIINNKGTGVDFSYDFANSRLRETMILTHRFSKNIFRTRELFACRTIQMLISGLVLGSIFCNLKDDLRGTEEKVGLFAFILTFLLSSSIEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLILAILFTVPLYWLVGLNTNFTAFLHFLLLIWLILYTANSVVVCFSALVPNFIVGNSVINGVIGSFFLFSGYFISNHEIPNYWIFMHYISLFKYPFEGFLINEFSNSKKCLEYMFGTCVMKGEDVLKEEGYGGEGSRWKNVGVTVGFIMVYRFISYVILRYKCSERRV 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03259 606 ProSitePatterns ABC transporters family signature. 143 157 IPR017871 GO:0005524|GO:0016887
Vifa6g03259 606 SMART AAA_5 72 250 IPR003593 GO:0016887
Vifa6g03259 606 Gene3D - 98 286 IPR027417 -
Vifa6g03259 606 MobiDBLite consensus disorder prediction 28 56 - -
Vifa6g03259 606 Pfam ABC transporter 116 171 IPR003439 GO:0005524
Vifa6g03259 606 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 43 244 IPR003439 GO:0005524
Vifa6g03259 606 Gene3D - 3 97 IPR027417 -
Vifa6g03259 606 Pfam ABC-2 type transporter 334 542 IPR013525 GO:0016020|GO:0140359
Vifa6g03259 606 Pfam ABC transporter 63 97 IPR003439 GO:0005524
Vifa6g03259 606 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 93 592 - -
Vifa6g03259 606 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 234 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03259 Vifa-Chr6 1074887670 1074889610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03259 61 249 Calmodulin-binding Proteins AT2G36910 21.097 1.15e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03259 K05681 - gmx:100789722 941.028