Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03256 ATGGGAAGTGAAAGTAGTGTGAAGCTTCCACCAGGGTTTTACTTTTCTCCAACGGATGAAGAACTAGTCCTTCATTTTCTTTATTCCAAAGCTTCTTTGCCGAATCATCCTAACATCATACCTCAACTTCACCTCTCTCAACATCATCCTTGCCAACTATACGGTAAAGCATTATCAAGTGGAAATCAACACTACTTTTTTACCGAAGAGAAGGAAAATAGAAGCAGTGAACATGGATATTGGAAGGAAATTGGGGTCACAAAACCTATAAATAAATGGGGAATAAAGAAGTATTTTGTGTTCAATCTTGACGAAGGAAGTGAAACAAGTTGGGTAATGGAAGAGTATGACGTTTCTGAATTTGGATCTCATGATGAGAGTTGGAGCAAATGGGTTTTATGCAAAGTGTATGAAAAGAAGATGTCACAACAAGGTGCAAGTTGTTGTTATAGTGATGATGATAATGAATCAGAGGTCTCATGGTTAGACCAAGTTTTTATGTCGTTAGATGATCATGATTTTGATCAAACAAGCCTACATAATTAA 546 0.3663 MGSESSVKLPPGFYFSPTDEELVLHFLYSKASLPNHPNIIPQLHLSQHHPCQLYGKALSSGNQHYFFTEEKENRSSEHGYWKEIGVTKPINKWGIKKYFVFNLDEGSETSWVMEEYDVSEFGSHDESWSKWVLCKVYEKKMSQQGASCCYSDDDNESEVSWLDQVFMSLDDHDFDQTSLHN 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03256 181 Pfam No apical meristem (NAM) protein 10 117 IPR003441 GO:0003677|GO:0006355
Vifa6g03256 181 SUPERFAMILY NAC domain 6 139 IPR036093 GO:0003677|GO:0006355
Vifa6g03256 181 Gene3D NAC domain 18 144 IPR036093 GO:0003677|GO:0006355
Vifa6g03256 181 PANTHER NAC TRANSCRIPTION FACTOR 56 9 152 - -
Vifa6g03256 181 ProSiteProfiles NAC domain profile. 9 139 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03256 Vifa-Chr6 1074726149 1074732399 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03256 1 140 NAC Transcription Factor Family AT1G77450 38.650 6.64e-25 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa6g03256 NAM 9e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03256 - - mtr:11435699 304.679