Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g03254 ATGGACATCATGACTGCTGTTCAGCTTGTGCTGAGAAAGTCGCGTGCTTATGGTGGTCTTGCAAGAGGTCTTCATGAGAGTGCTAAAGTGATTGAGAAGCATACTGCACAGCTTTGTGTCCTAGCTGAGGATTGTGACCAACCTGATTATGTTATGTTGGTCAAGGCCCTTTGTGCCGAACACAATGTTAGTTTGTTGACTGTTCCAAATGCAAAGACCCTCGGAGAATGGGCTGGTCTGTGCAAGATTGATTCAGAAGGAAAAGCTAGGAAGGTAACTGGTTGCTCCTGCGTGGTTGTCAAGGATTTTGGCGAGGAACACGAAGCATATAATGTTGTTTTGCAACATGTGAAATCTAACTGA 363 0.449 MDIMTAVQLVLRKSRAYGGLARGLHESAKVIEKHTAQLCVLAEDCDQPDYVMLVKALCAEHNVSLLTVPNAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKSN 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g03254 120 Gene3D - 1 120 IPR029064 -
Vifa6g03254 120 PRINTS Ribosomal protein S12E family signature 10 23 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vifa6g03254 120 PRINTS Ribosomal protein S12E family signature 24 40 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vifa6g03254 120 PRINTS Ribosomal protein S12E family signature 90 103 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vifa6g03254 120 PRINTS Ribosomal protein S12E family signature 65 86 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vifa6g03254 120 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 6 99 IPR004038 -
Vifa6g03254 120 PANTHER 40S RIBOSOMAL PROTEIN S12 1 119 - -
Vifa6g03254 120 SUPERFAMILY L30e-like 2 118 IPR029064 -
Vifa6g03254 120 FunFam 40S ribosomal protein S12 1 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g03254 Vifa-Chr6 1073936678 1073937232 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g03254 1 120 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 75.000 1.78e-66 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g03254 K02951 - gmx:100499723 232.646